NAU4932, NAU4932 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU4932
Genbank IDDT548903
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
TM-1
Source SequenceDT548903.1
Source TypeEST
Repeat Motif(cag)19
PCR ConditionAnnealing temperature: 57
Primer 1NAU4932_F: AATTGGCCGAGTTCAGATAC
Primer 2NAU4932_R: GATGATGGTGATGTTGCTGT
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT548903
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:54620870..54621126 +
D05chromosomeD05:47891834..47892060 -
CM018206.1chromosomeCM018206.1:62575456..62575682 +
CM018219.1chromosomeCM018219.1:47306604..47306830 -
D5_05chromosomeD5_05:43419309..43419529 -
KI_05chromosomeKI_05:32455630..32455856 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:76832060..76832292 +
D10_05chromosomeD10_05:15338967..15339187 +
CM016618.1chromosomeCM016618.1:26262326..26262552 +
At_chr3chromosomeAt_chr3:1227779..1228023 +
Dt_chr9chromosomeDt_chr9:22332205..22332431 -
A05chromosomeA05:49494514..49494770 +
D05chromosomeD05:46703646..46703872 -
Ghir_D05chromosomeGhir_D05:47663174..47663400 -
Ghir_A05chromosomeGhir_A05:67092310..67092566 -
A05chromosomeA05:68697795..68698051 +
D05chromosomeD05:48748414..48748640 -
A05chromosomeA05:67478009..67478253 +
D05chromosomeD05:49424876..49425102 -
A05chromosomeA05:66447712..66447968 +
D05chromosomeD05:48178745..48178971 -
At05chromosomeAt05:48940397..48940623 +
Dt05chromosomeDt05:49846170..49846396 -
scaffold5512supercontigscaffold5512:215521..215747 +
scaffold9167supercontigscaffold9167:208376..208602 -
Gbar_D05chromosomeGbar_D05:44952568..44952794 +
Gbar_A05chromosomeGbar_A05:63090770..63090996 +
A05chromosomeA05:65595860..65596086 +
D05chromosomeD05:49614948..49615174 -
CM017614.1chromosomeCM017614.1:64553853..64554079 +
CM017627.1chromosomeCM017627.1:48554836..48555062 -
CM017640.1chromosomeCM017640.1:68435793..68436010 +
CM017653.1chromosomeCM017653.1:49682986..49683218 -
CM017692.1chromosomeCM017692.1:64651226..64651452 +
CM017705.1chromosomeCM017705.1:48844655..48844881 -
A05chromosomeA05:69139445..69139701 +
D05chromosomeD05:50191951..50192177 -
Chr05chromosomeChr05:69333603..69333829 +
Chr05chromosomeChr05:44186399..44186619 -
B_05chromosomeB_05:27326215..27326441 +
Chr09chromosomeChr09:44412343..44412563 -
chr09chromosomechr09:36159860..36160089 -
Chr_09chromosomeChr_09:35064194..35064414 -
Chr09chromosomeChr09:47462685..47462911 -
Chr09chromosomeChr09:32578201..32578427 -
Chr09chromosomeChr09:28452761..28452978 -
Chr09chromosomeChr09:33573068..33573285 -
E05chromosomeE05:79130213..79130427 -
F05chromosomeF05:56315023..56315258 +
Chr05chromosomeChr05:33972257..33972477 +
Chr09chromosomeNAU4932:1..823 .
Chr09:43771515..43772557 -
scaffold222supercontigNAU4932:1..823 .
scaffold222:160776..161818 -
Germplasm
Stock NameType
TM-1accession
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT548903.1DT548903.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch05_At.05N/A24NAU4932View
2(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch05_At.05N/A80.7NAU4932View
3Yumian-1 x 7235, RIL (2015)AD_ch12_At.12N/A86.6NAU4932View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A182NAU4932View
Sequence
>NAU4932 ID=NAU4932; Name=NAU4932; organism=Gossypium hirsutum; type=genetic_marker; length=257bp
AATTGGCCGAGTTCAGATACAACAACAAGTTCAGGATTCTGGTTATGTAT
TGCAGCAACCACAATTCGATCAACAGCAACAACCACAACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCTT
GCATGCTGCTGGTGCAACGCATTACATTCATCATCACCAGTCTGGGGCAG
TGCCAATCTCAGCTTATTATCCTGTATATCCTTCCCAACAGCAACATCAC
CATCATC