NAU4923, NAU4923 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU4923
Genbank IDDT548156
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
TM-1
Source SequenceDT548156.1
Source TypeEST
Repeat Motif(gaa)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU4923_F: AATTGCTGTCAATGCGAGTA
Primer 2NAU4923_R: CTCAATTGCTTCCTGGTTTT
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT548156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:8509769..8510008 -
CM018215.1chromosomeCM018215.1:8658134..8658374 -
CM018202.1chromosomeCM018202.1:10163870..10164113 -
D5_01chromosomeD5_01:8319958..8320204 -
KI_01chromosomeKI_01:6047195..6047429 -
D10_01chromosomeD10_01:52056317..52056560 +
CM016614.1chromosomeCM016614.1:14420799..14421036 -
scaffold729.1supercontigscaffold729.1:630793..631033 -
D01chromosomeD01:7783032..7783271 -
Ghir_D01chromosomeGhir_D01:9216917..9217156 -
D01chromosomeD01:8986430..8986669 -
D01chromosomeD01:8683268..8683508 -
D01chromosomeD01:9080609..9080848 -
Dt01chromosomeDt01:7560432..7560672 -
At01chromosomeAt01:9858644..9858884 -
At01chromosomeAt01:9859702..9859945 -
scaffold5293supercontigscaffold5293:79280..79520 -
scaffold5293supercontigscaffold5293:80338..80581 -
scaffold16155supercontigscaffold16155:144905..145145 -
Gbar_D01chromosomeGbar_D01:9389133..9389372 -
Gbar_A01chromosomeGbar_A01:10248717..10248960 -
D01chromosomeD01:9090119..9090480 -
A01chromosomeA01:9859630..9859873 -
CM017623.1chromosomeCM017623.1:8915717..8915955 -
CM017649.1chromosomeCM017649.1:9723523..9723763 -
CM017636.1chromosomeCM017636.1:10557105..10557349 -
CM017701.1chromosomeCM017701.1:9040193..9040433 -
CM017688.1chromosomeCM017688.1:10441620..10441865 -
D01chromosomeD01:9360676..9360915 -
Chr01chromosomeChr01:8235822..8236062 -
Chr02chromosomeChr02:8849016..8849260 -
chr02chromosomechr02:8374552..8374928 -
Chr_02chromosomeChr_02:7658672..7658912 -
Chr02chromosomeChr02:8921074..8921320 -
Chr02_3394157chromosomeChr02_3394157:15021..15259 -
E01chromosomeE01:12535200..12535436 -
F01chromosomeF01:8985144..8985378 -
Chr01chromosomeChr01:182372458..182372703 +
Germplasm
Stock NameType
TM-1accession
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT548156.1DT548156.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A0NAU4923View
2Yumian-1 x 7235, RIL (2015)AD_ch01_At.01N/A65.1NAU4923View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch15_Dt.01N/A38.2NAU4923View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A35.71NAU4923View
Sequence
>NAU4923 ID=NAU4923; Name=NAU4923; organism=Gossypium hirsutum; type=genetic_marker; length=240bp
AATTGCTGTCAATGCGAGTAAAAATACAAAGCTAGAAGAAACCCAACTTT
TCATGGCCAAAAGTAAAGGTGGATTGCTAAAGAAGAAAGGTTGATTTTTT
TTGAAGAAGAAGAAGAAGAAGAAAGAAGAGGAAACAAAAAAAAAAACAAT
GCCAACAGTTTGGTTTTCATTGAAGAGATCTTTACACTGCAAATCAGAGC
CATCAGATGTTCATGACCCAAAAACCAGGAAGCAATTGAG