NAU4891, NAU4891 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU4891
Genbank IDDT545481
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
TM-1
Source SequenceDT545481.1
Source TypeEST
Repeat Motif(gccgct)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU4891_F: GATGGTCAGGCAGAGCTAGT
Primer 2NAU4891_R: AGACCTCACCCTCAGGTGTA
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT545481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:14327299..14327589 -
A01chromosomeA01:19346474..19346771 -
CM018215.1chromosomeCM018215.1:14173746..14174036 -
CM018202.1chromosomeCM018202.1:17628318..17628624 -
D5_01chromosomeD5_01:13607642..13607932 -
KI_01chromosomeKI_01:8708293..8708587 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:19614087..19614381 -
D10_01chromosomeD10_01:46594692..46594982 +
CM016614.1chromosomeCM016614.1:26458924..26459209 -
At_chr2chromosomeAt_chr2:17494016..17494310 +
Dt_chr2chromosomeDt_chr2:41973023..41973313 -
D01chromosomeD01:13328927..13329217 -
A01chromosomeA01:17991434..17991731 -
Ghir_D01chromosomeGhir_D01:14649689..14649979 -
Ghir_A01chromosomeGhir_A01:18576854..18577151 -
D01chromosomeD01:14358292..14358582 -
A01chromosomeA01:18020138..18020435 -
D01chromosomeD01:14182040..14182330 -
A01chromosomeA01:18456050..18456347 -
D01chromosomeD01:14542454..14542744 -
A01chromosomeA01:19056820..19057117 -
scaffold6738supercontigscaffold6738:29598..29904 +
scaffold6738supercontigscaffold6738:26462..26764 +
scaffold6738supercontigscaffold6738:18664..18966 +
scaffold3545supercontigscaffold3545:505475..505765 +
Gbar_D01chromosomeGbar_D01:14772123..14772413 -
Gbar_A01chromosomeGbar_A01:17775778..17776084 -
D01chromosomeD01:14575679..14575969 -
A01chromosomeA01:17639739..17640045 -
CM017623.1chromosomeCM017623.1:14417817..14418107 -
CM017610.1chromosomeCM017610.1:19029792..19030092 -
CM017649.1chromosomeCM017649.1:15277999..15278289 -
CM017636.1chromosomeCM017636.1:18180478..18180778 -
CM017701.1chromosomeCM017701.1:14563295..14563585 -
CM017688.1chromosomeCM017688.1:17777619..17777919 -
D01chromosomeD01:14893793..14894083 -
A01chromosomeA01:18516502..18516799 -
Chr01chromosomeChr01:18614523..18614817 -
Chr01chromosomeChr01:19880123..19880417 -
Chr01chromosomeChr01:13489800..13490090 -
B_01chromosomeB_01:20328523..20328811 -
Chr02chromosomeChr02:14534465..14534755 -
chr02chromosomechr02:12749466..12749756 -
Chr_02chromosomeChr_02:11095422..11095712 -
Chr02chromosomeChr02:14220576..14220866 -
Chr02chromosomeChr02:13755998..13756288 -
Chr02chromosomeChr02:9637400..9637690 -
Chr02chromosomeChr02:12423048..12423338 -
E01chromosomeE01:21634410..21634701 -
F01chromosomeF01:16105996..16106290 -
Chr01chromosomeChr01:165708380..165708674 +
Chr02chromosomeNAU4891:1..790 .
Chr02:15428837..15429614 -
Chr2chromosomeNAU4891:1..790 .
Chr2:37295209..37295986 +
Germplasm
Stock NameType
TM-1accession
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT545481.1DT545481.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch01_At.01N/A19.59NAU4891View
2AD-genome wide Reference Map (2009)AD_ch01_At.01N/A81NAU4891View
3Prema x 86-1, RIL (2015)AD_ch01_At.01N/A8.83NAU4891View
4DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A80.56NAU4891View
5DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A80.56NAU4891View
6TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch01_At.01N/A62.7NAU4891View
7DH962 x Ji Mian 5, RIL (2015)AD_ch01_At.01N/A49NAU4891View
8DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A49NAU4891View
9TM-1 x Hai-7124, BC1 (2007)AD_ch01_At.01N/A61.7NAU4891-450View
10TM-1 x Hai-7124, BC1 (2008)AD_ch01_At.01N/A64.71NAU4891-450View
11TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A68.8NAU4891-450View
Sequence
>NAU4891 ID=NAU4891; Name=NAU4891; organism=Gossypium hirsutum; type=genetic_marker; length=298bp
GATGGTCAGGCAGAGCTAGTTTCATCTCCTCTGGCTTCACCTTCAGGGGT
TGATGATGAAGCTCTAGTTACCACAGCAGAAGGTGATAACTCTCCTGATG
CTGTAAATGATGAGAAGAATGAGGAAGGTTATATAGGTGAAGAGACTGTT
GCCGAAGGATCTGAAAAGTCGAATGATGGTAATGAGCAGAGTGTAGTGGA
GACGGATCCAATGCCTGAAGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTG
GCACTAATGAGAGTGGCACAACAAGTGGTACACCTGAGGGTGAGGTCT