|
Marker Overview
Name | NAU4891 |
Genbank ID | DT545481 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | TM-1 TM-1
|
Source Sequence | DT545481.1
|
Source Type | EST |
Repeat Motif | (gccgct)5 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU4891_F: GATGGTCAGGCAGAGCTAGT |
Primer 2 | NAU4891_R: AGACCTCACCCTCAGGTGTA |
Restriction Enzyme | EcoRI; NotI |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
|
Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Germplasm
Stock Name | Type |
TM-1 | accession |
TM-1 | accession |
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch01_At.01 | N/A | 19.59 | NAU4891 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch01_At.01 | N/A | 81 | NAU4891 | View |
3 | Prema x 86-1, RIL (2015) | AD_ch01_At.01 | N/A | 8.83 | NAU4891 | View |
4 | DH962 X Ji Mian 5, F2 (2015) | AD_ch01_At.01 | N/A | 80.56 | NAU4891 | View |
5 | DH962 X Ji Mian 5, F2 (2015) | AD_ch15_Dt.01 | N/A | 80.56 | NAU4891 | View |
6 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch01_At.01 | N/A | 62.7 | NAU4891 | View |
7 | DH962 x Ji Mian 5, RIL (2015) | AD_ch01_At.01 | N/A | 49 | NAU4891 | View |
8 | DH962 x Ji Mian 5, RIL (2015) | AD_ch15_Dt.01 | N/A | 49 | NAU4891 | View |
9 | TM-1 x Hai-7124, BC1 (2007) | AD_ch01_At.01 | N/A | 61.7 | NAU4891-450 | View |
10 | TM-1 x Hai-7124, BC1 (2008) | AD_ch01_At.01 | N/A | 64.71 | NAU4891-450 | View |
11 | TM-1 x Hai-7124, BC1 (2012) | AD_ch01_At.01 | N/A | 68.8 | NAU4891-450 | View |
Sequence
>NAU4891 ID=NAU4891; Name=NAU4891; organism=Gossypium hirsutum; type=genetic_marker; length=298bp GATGGTCAGGCAGAGCTAGTTTCATCTCCTCTGGCTTCACCTTCAGGGGT TGATGATGAAGCTCTAGTTACCACAGCAGAAGGTGATAACTCTCCTGATG CTGTAAATGATGAGAAGAATGAGGAAGGTTATATAGGTGAAGAGACTGTT GCCGAAGGATCTGAAAAGTCGAATGATGGTAATGAGCAGAGTGTAGTGGA GACGGATCCAATGCCTGAAGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTG GCACTAATGAGAGTGGCACAACAAGTGGTACACCTGAGGGTGAGGTCT
|