NAU4057, NAU4057 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU4057
Genbank IDCO130626
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(c(tc)5cc(tc)3)9.5
PCR ConditionAnnealing temperature: 57
Primer 1NAU4057_F: ACAACCACCAACGCTAATCT
Primer 2NAU4057_R: TCCCTCGTTGTCTTTCTCTC
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO130626
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:96984934..96985168 +
D04chromosomeD04:3784404..3784607 -
CM018206.1chromosomeCM018206.1:98930668..98930896 +
CM018218.1chromosomeCM018218.1:3209235..3209438 -
D5_04chromosomeD5_04:46940570..46940774 +
KI_06chromosomeKI_06:30433313..30433527 -
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:94802593..94802799 +
CM016617.1chromosomeCM016617.1:4633853..4634072 -
At_chr9chromosomeAt_chr9:57115051..57115255 -
At_chr9chromosomeAt_chr9:55982785..55982988 -
scaffold77834supercontigscaffold77834:223..426 +
A05chromosomeA05:88657196..88657430 +
Ghir_A05chromosomeGhir_A05:105666831..105667064 +
Ghir_D04chromosomeGhir_D04:3392510..3392713 -
A05chromosomeA05:107242711..107242947 +
D04chromosomeD04:3412880..3413083 -
A05chromosomeA05:105770419..105770651 +
D04chromosomeD04:3257939..3258142 -
A05chromosomeA05:103723649..103723884 +
D04chromosomeD04:3092325..3092528 -
scaffold12118supercontigscaffold12118:2290..2493 +
Gbar_A05chromosomeGbar_A05:99026284..99026509 +
Gbar_D04chromosomeGbar_D04:3182875..3183078 -
A05chromosomeA05:103916521..103916747 +
D04chromosomeD04:3221868..3222071 -
CM017614.1chromosomeCM017614.1:101340771..101341013 +
CM017626.1chromosomeCM017626.1:3318925..3319128 -
CM017640.1chromosomeCM017640.1:109859555..109859783 +
CM017652.1chromosomeCM017652.1:3345886..3346088 -
CM017692.1chromosomeCM017692.1:101867631..101867849 +
CM017704.1chromosomeCM017704.1:3416451..3416654 -
A05chromosomeA05:107550022..107550256 +
D04chromosomeD04:3746142..3746345 -
Chr04chromosomeChr04:3865661..3865859 -
Chr04chromosomeChr04:3840307..3840513 -
Chr04chromosomeChr04:47372894..47373098 +
B_02chromosomeB_02:80924426..80924629 +
Chr12chromosomeChr12:3388776..3388979 -
chr12chromosomechr12:3284098..3284472 -
Chr_12chromosomeChr_12:2521286..2521489 -
Chr12chromosomeChr12:3369929..3370133 -
Chr12chromosomeChr12:3402385..3402588 -
Chr12chromosomeChr12:2313569..2313771 -
Chr12chromosomeChr12:3242087..3242290 -
E04chromosomeE04:5068943..5069136 -
F04chromosomeF04:3414093..3414309 -
Chr04chromosomeChr04:4256128..4256318 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch05_At.05N/A0NAU4057View
2Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A148.72NAU4057View
3AD-genome wide Reference Map (2009)AD_ch05_At.05N/A314NAU4057View
4Zhongmiansuo-12 x 8891, RIL (2007)AD_ch05_At.05N/A55.6NAU4057View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch05_At.05N/A29.1NAU4057View
6Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A111.6NAU4057View
7DH962 X Ji Mian 5, F2 (2015)AD_ch05_At.05N/A37.8NAU4057View
8TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch05_At.05N/A95.6NAU4057View
9Emian-22 x 3-79, BC1 (2015)AD_ch05_At.05N/A222NAU4057View
100-153 x sGK9708, RIL (2016)AD_ch05_At.05N/A158.3NAU4057View
11DH962 x Ji Mian 5, RIL (2015)AD_ch05_At.05N/A21.7NAU4057View
12CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A225.4NAU4057View
13SG 747 x Giza 75, BIL (2013)AD_ch05_At.05N/A173.9NAU4057View
14LMY28 x XLZ24, RIL (2018)AD_ch05_At.05N/A163.46NAU4057View
15TM-1 x Hai-7124, BC1 (2007)AD_ch05_At.05N/A191NAU4057-230View
16TM-1 x Hai-7124, BC1 (2008)AD_ch05_At.05N/A178.52NAU4057-230View
17TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A29.5NAU4057-230View
Sequence
>NAU4057 ID=NAU4057; Name=NAU4057; organism=Gossypium raimondii; type=genetic_marker; length=205bp
ACAACCACCAACGCTAATCTCCTTAGATCCATCATCTCTAACAATTACAA
ACAATCACCCCCCTCTCTCTCTCCCTCTCTCTTTGGCTCTACGAATTTCA
AACTTAATTTCGTTATTGGTTTTTTTTGTTTTGCCTAGGGTTTTTGTTAA
AATTTAAAAATCCAAAGAAGATTCAAAGAAGGTAGGAGAGAAAGACAACG
AGGGA