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Marker Overview
Name | NAU4057 |
Genbank ID | CO130626 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (c(tc)5cc(tc)3)9.5 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU4057_F: ACAACCACCAACGCTAATCT |
Primer 2 | NAU4057_R: TCCCTCGTTGTCTTTCTCTC |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch05_At.05 | N/A | 0 | NAU4057 | View |
2 | Emian-22 x 3-79, BC1 (2011) | AD_ch05_At.05 | N/A | 148.72 | NAU4057 | View |
3 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 314 | NAU4057 | View |
4 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_ch05_At.05 | N/A | 55.6 | NAU4057 | View |
5 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch05_At.05 | N/A | 29.1 | NAU4057 | View |
6 | Yumian-1 x 7235, RIL (2015) | AD_ch05_At.05 | N/A | 111.6 | NAU4057 | View |
7 | DH962 X Ji Mian 5, F2 (2015) | AD_ch05_At.05 | N/A | 37.8 | NAU4057 | View |
8 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch05_At.05 | N/A | 95.6 | NAU4057 | View |
9 | Emian-22 x 3-79, BC1 (2015) | AD_ch05_At.05 | N/A | 222 | NAU4057 | View |
10 | 0-153 x sGK9708, RIL (2016) | AD_ch05_At.05 | N/A | 158.3 | NAU4057 | View |
11 | DH962 x Ji Mian 5, RIL (2015) | AD_ch05_At.05 | N/A | 21.7 | NAU4057 | View |
12 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch05_At.05 | N/A | 225.4 | NAU4057 | View |
13 | SG 747 x Giza 75, BIL (2013) | AD_ch05_At.05 | N/A | 173.9 | NAU4057 | View |
14 | LMY28 x XLZ24, RIL (2018) | AD_ch05_At.05 | N/A | 163.46 | NAU4057 | View |
15 | TM-1 x Hai-7124, BC1 (2007) | AD_ch05_At.05 | N/A | 191 | NAU4057-230 | View |
16 | TM-1 x Hai-7124, BC1 (2008) | AD_ch05_At.05 | N/A | 178.52 | NAU4057-230 | View |
17 | TM-1 x Hai-7124, BC1 (2012) | AD_ch05_At.05 | N/A | 29.5 | NAU4057-230 | View |
Sequence
>NAU4057 ID=NAU4057; Name=NAU4057; organism=Gossypium raimondii; type=genetic_marker; length=205bp ACAACCACCAACGCTAATCTCCTTAGATCCATCATCTCTAACAATTACAA ACAATCACCCCCCTCTCTCTCTCCCTCTCTCTTTGGCTCTACGAATTTCA AACTTAATTTCGTTATTGGTTTTTTTTGTTTTGCCTAGGGTTTTTGTTAA AATTTAAAAATCCAAAGAAGATTCAAAGAAGGTAGGAGAGAAAGACAACG AGGGA
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