NAU4055, NAU4055 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU4055
Genbank IDCO130572
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(c(tc)9cc(tc)3)13.5
PCR ConditionAnnealing temperature: 57
Primer 1NAU4055_F: AGATTAGGGTTGGGGTTAGG
Primer 2NAU4055_R: GAAGGAAGAGGCGATAGATTT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO130572
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:28082304..28082490 +
CM018219.1chromosomeCM018219.1:26525011..26525199 +
D5_05chromosomeD5_05:25122109..25122290 +
CM016618.1chromosomeCM016618.1:77959286..77959464 -
Dt_chr9chromosomeDt_chr9:45246366..45246552 -
D05chromosomeD05:27189004..27189190 +
Ghir_D05chromosomeGhir_D05:27361894..27362080 +
Ghir_A05chromosomeGhir_A05:30964058..30964219 +
D05chromosomeD05:26567262..26567448 +
D05chromosomeD05:27193699..27193885 +
D05chromosomeD05:27066107..27066293 +
Dt05chromosomeDt05:28044273..28044461 +
scaffold13365supercontigscaffold13365:143754..143942 +
scaffold5658supercontigscaffold5658:137142..137303 -
Gbar_D05chromosomeGbar_D05:27036724..27036912 +
Gbar_A05chromosomeGbar_A05:29642232..29642393 +
D05chromosomeD05:26810451..26810641 +
CM017627.1chromosomeCM017627.1:26843448..26843632 +
CM017653.1chromosomeCM017653.1:27216310..27216494 +
CM017705.1chromosomeCM017705.1:26882469..26882655 +
D05chromosomeD05:27693955..27694141 +
Chr05chromosomeChr05:32554487..32554663 +
Chr05chromosomeChr05:31876422..31876598 +
Chr05chromosomeChr05:25242052..25242233 +
B_05chromosomeB_05:54831389..54831581 -
Chr09chromosomeChr09:25828704..25828883 +
Chr_09chromosomeChr_09:21550632..21550839 +
Chr09chromosomeChr09:26619704..26619890 +
Chr09chromosomeChr09:21118042..21118224 +
Chr09chromosomeChr09:21614800..21614980 +
E05chromosomeE05:34271690..34271870 +
Chr05chromosomeChr05:95374258..95374448 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A82.06NAU4055View
2AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A206NAU4055View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch05_At.05N/A102.9NAU4055View
4SG 747 x Giza 75, BIL (2013)AD_ch19_Dt.05N/A114.7NAU4055View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A3.8NAU4055View
6LMY22 x LY343, RIL (2016)chr.19-1N/A103.7NAU4055View
7LMY22 x LY343, RIL (2020)D05N/A48.84NAU4055View
8TM-1 x Hai-7124, BC1 (2007)AD_ch19_Dt.05N/A114.7NAU4055-850View
9TM-1 x Hai-7124, BC1 (2008)AD_ch19_Dt.05N/A114.34NAU4055-850View
10TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A76.3NAU4055-850View
11CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A155.94NAU4055View
Sequence
>NAU4055 ID=NAU4055; Name=NAU4055; organism=Gossypium raimondii; type=genetic_marker; length=182bp
AGATTAGGGTTGGGGTTAGGGAACTTACTAGAATGAGGGGAAAGGGAGGG
AGACAAAGAAAGGGAGGGAGAAAAAGAAGTGCTGCCCATTATTAGCATTA
TCTCTCGCTCTCTCTCTCTCTCTCTCCCTCTCTCTGTGGACAAATCTAGA
CCAAGTTAGAAAAATCTATCGCCTCTTCCTTC