|
Marker Overview
Name | NAU4055 |
Genbank ID | CO130572 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (c(tc)9cc(tc)3)13.5 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU4055_F: AGATTAGGGTTGGGGTTAGG |
Primer 2 | NAU4055_R: GAAGGAAGAGGCGATAGATTT |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
|
Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch19_Dt.05 | N/A | 82.06 | NAU4055 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch19_Dt.05 | N/A | 206 | NAU4055 | View |
3 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch05_At.05 | N/A | 102.9 | NAU4055 | View |
4 | SG 747 x Giza 75, BIL (2013) | AD_ch19_Dt.05 | N/A | 114.7 | NAU4055 | View |
5 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch05_At.05 | N/A | 3.8 | NAU4055 | View |
6 | LMY22 x LY343, RIL (2016) | chr.19-1 | N/A | 103.7 | NAU4055 | View |
7 | LMY22 x LY343, RIL (2020) | D05 | N/A | 48.84 | NAU4055 | View |
8 | TM-1 x Hai-7124, BC1 (2007) | AD_ch19_Dt.05 | N/A | 114.7 | NAU4055-850 | View |
9 | TM-1 x Hai-7124, BC1 (2008) | AD_ch19_Dt.05 | N/A | 114.34 | NAU4055-850 | View |
10 | TM-1 x Hai-7124, BC1 (2012) | AD_ch19_Dt.05 | N/A | 76.3 | NAU4055-850 | View |
11 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch05_At.05 | N/A | 155.94 | NAU4055 | View |
Sequence
>NAU4055 ID=NAU4055; Name=NAU4055; organism=Gossypium raimondii; type=genetic_marker; length=182bp AGATTAGGGTTGGGGTTAGGGAACTTACTAGAATGAGGGGAAAGGGAGGG AGACAAAGAAAGGGAGGGAGAAAAAGAAGTGCTGCCCATTATTAGCATTA TCTCTCGCTCTCTCTCTCTCTCTCTCCCTCTCTCTGTGGACAAATCTAGA CCAAGTTAGAAAAATCTATCGCCTCTTCCTTC
|