NAU4047, NAU4047 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU4047
Genbank IDCO130203
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(cac)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU4047_F: ATTGGAGCTGTTTGGCTAAG
Primer 2NAU4047_R: AATGGCTCCTCAATGGTAAA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO130203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:1395135..1395488 -
A12chromosomeA12:1500039..1500395 -
CM018226.1chromosomeCM018226.1:1374607..1374960 -
CM018213.1chromosomeCM018213.1:1356734..1357087 -
D5_12chromosomeD5_12:56058082..56058435 +
KI_12chromosomeKI_12:11604769..11605122 -
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:101505922..101506275 +
D10_12chromosomeD10_12:1178259..1178612 -
CM016625.1chromosomeCM016625.1:124736521..124736874 +
CM016616.1chromosomeCM016616.1:152643422..152643774 +
At_chr8chromosomeAt_chr8:42498808..42499164 +
scaffold3276.1supercontigscaffold3276.1:69603..69956 -
D12chromosomeD12:1374110..1374463 -
A12chromosomeA12:1331969..1332394 -
Ghir_D12chromosomeGhir_D12:1380652..1381005 -
Ghir_A12chromosomeGhir_A12:1483263..1483619 -
D12chromosomeD12:1364433..1364786 -
A12chromosomeA12:1469622..1469978 -
D12chromosomeD12:1388560..1388913 -
A12chromosomeA12:1503936..1504292 -
D12chromosomeD12:1416354..1416707 -
A12chromosomeA12:1487071..1487427 -
Dt12chromosomeDt12:1519031..1519384 -
scaffold6256supercontigscaffold6256:39900..40496 +
scaffold832supercontigscaffold832:416233..416586 -
Gbar_D12chromosomeGbar_D12:1364597..1364950 -
Gbar_A12chromosomeGbar_A12:1323518..1323871 -
D12chromosomeD12:1321639..1321992 -
A12chromosomeA12:1417291..1417644 -
CM017634.1chromosomeCM017634.1:1289944..1290297 -
CM017621.1chromosomeCM017621.1:1333429..1333782 -
CM017660.1chromosomeCM017660.1:1300699..1301052 -
CM017647.1chromosomeCM017647.1:1580272..1580625 -
CM017712.1chromosomeCM017712.1:1373001..1373354 -
CM017699.1chromosomeCM017699.1:1335023..1335376 -
D12chromosomeD12:1450669..1451022 -
D12chromosomeD12:1419513..1419869 -
A12chromosomeA12:1498868..1499223 -
Chr12chromosomeChr12:1416157..1416510 -
Chr12chromosomeChr12:1444190..1444543 -
Chr12chromosomeChr12:1367392..1367745 -
B_12chromosomeB_12:1524919..1525272 -
Chr08chromosomeChr08:1292689..1293042 -
chr08chromosomechr08:1235109..1235462 -
Chr_08chromosomeChr_08:1238387..1238740 -
Chr08chromosomeChr08:1285444..1285797 -
Chr08chromosomeChr08:1204406..1204759 -
Chr08_3405562chromosomeChr08_3405562:5621..5974 -
Chr08chromosomeChr08:1248001..1248354 -
E12chromosomeE12:1514086..1514439 -
F12chromosomeF12:1058939..1059292 -
Chr12chromosomeChr12:1371835..1372188 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch12_At.12N/A89nau4047View
2(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A204.8nau4047View
3Yumian-1 x T586, RIL (2015)AD_ch12_At.12N/A6.2nau4047View
4Yumian-1 x 7235, RIL (2015)AD_ch12_At.12N/A39.5nau4047View
5TM-1 x Hai-7124, BC1 (2007)AD_ch12_At.12N/A58.9NAU4047-400View
6TM-1 x Hai-7124, BC1 (2008)AD_ch12_At.12N/A11.07NAU4047-400View
7TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A11.1NAU4047-400View
8PD 94042 x (AD)4-08, F2 (2016)AD_ch12_At.12N/A20.9NAU4047View
Sequence
>NAU4047 ID=NAU4047; Name=NAU4047; organism=Gossypium raimondii; type=genetic_marker; length=229bp
ATTGGAGCTGTTTGGCTAAGCAGTTCAAAAGATCCTATTGAGTACTTCTT
CTGTAAGGACCCAATTGAAATTTGTTGTAAGGAGGTAGATAGGACAGCTA
CACAGGCACAAAGAAAGCCATGCGCGTTAATTTTTACATCAGTAACTGTA
CAAACACCCACACCAATCACCACCACCACCACTGCCATCTTGACTTTACT
CGAGTAATGTTTACCATTGAGGAGCCATT