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Marker Overview
| Name | NAU4045 |
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| Genbank ID | CO130189 |
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| Type | SSR |
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| Species | Gossypium raimondii |
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| Source Type | EST |
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| Repeat Motif | (gtc)8 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU4045_F: CCTCTTCTTCACCCTCTTCA |
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| Primer 2 | NAU4045_R: ATGTGCAGGTTCTTCACTCA |
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| Restriction Enzyme | NotI; EcoRV |
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| Publication | [view all] |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch01_At.01 | N/A | 79.25 | NAU4045a | View |
| 2 | SG 747 x Giza 75, BIL (2013) | AD_ch01_At.01 | N/A | 0 | NAU4045a | View |
| 3 | Emian-22 x 3-79, BC1 (2011) | AD_ch15_Dt.01 | N/A | 36.87 | NAU4045b | View |
| 4 | SG 747 x Giza 75, BIL (2013) | AD_ch08_At.08 | N/A | 57.5 | NAU4045b | View |
| 5 | AD-genome wide Reference Map (2009) | AD_ch01_At.01 | N/A | 185 | nau4045 | View |
| 6 | AD-genome wide Reference Map (2009) | AD_ch08_At.08 | N/A | 115 | nau4045 | View |
| 7 | Yumian-1 x T586, RIL (2015) | AD_ch01_At.01 | N/A | 15.3 | nau4045 | View |
| 8 | Prema x 86-1, RIL (2015) | AD_ch01_At.01 | N/A | 4.72 | nau4045 | View |
| 9 | IL138-A11-3 x TM-1, F2:3 (2014) | AD_ch01_At.01 | N/A | 0 | nau4045 | View |
| 10 | GX1135 x GX100-2, F2 (2013) | AD_ch08_At.08 | N/A | 34.5 | nau4045 | View |
| 11 | GX1135 x GX100-2, RIL (2016) | AD_ch01_At.01 | N/A | 32.4 | nau4045 | View |
| 12 | (86-1 x G. anomalum) x Su8289, BC2F1 (2015) | ABD_Bh.01 | N/A | 111.5 | nau4045 | View |
| 13 | GX1135 x VGX100-2, RIL (2016) | AD_ch14_Dt.02 | N/A | 92.6 | nau4045 | View |
| 14 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch15_Dt.01 | N/A | 136.3 | nau4045 | View |
| 15 | 901-001 x sGK156, F2 (2019) | AD_ch01_At.01 | N/A | 13.36 | nau4045 | View |
| 16 | TM-1 x Hai-7124, BC1 (2007) | AD_ch01_At.01 | N/A | 24.8 | NAU4045-160 | View |
| 17 | TM-1 x Hai-7124, BC1 (2008) | AD_ch01_At.01 | N/A | 28.19 | NAU4045-160 | View |
| 18 | TM-1 x Hai-7124, BC1 (2012) | AD_ch01_At.01 | N/A | 103.7 | NAU4045-160 | View |
| 19 | TM-1 x Hai-7124, BC1 (2007) | AD_ch08_At.08 | N/A | 57.8 | NAU4045-350 | View |
| 20 | TM-1 x Hai-7124, BC1 (2008) | AD_ch08_At.08 | N/A | 69.29 | NAU4045-350 | View |
| 21 | TM-1 x Hai-7124, BC1 (2012) | AD_ch08_At.08 | N/A | 62.9 | NAU4045-350 | View |
| 22 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch15_Dt.01 | N/A | 36.9 | NAU4045 | View |
Sequence
>NAU4045 ID=NAU4045; Name=NAU4045; organism=Gossypium raimondii; type=genetic_marker; length=165bp
CCTCTTCTTCACCCTCTTCATCTTCATCACTGTCGTCATCGTCGTCGTCG
TCGTCATCGTCATCGCCGTCGCCTTCATCGTCGTCATCATCGTCTTTAAC
ATCCTCGCCCTCCTCGTCATCAGCTATCAGGACAGGAGGACCGGATGAGT
GAAGAACCTGCACAT
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