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Marker Overview
Name | NAU4031 |
Genbank ID | CO129562 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (ctg)8 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU4031_F: TAATGCTAGGTTGCTGGACA |
Primer 2 | NAU4031_R: TTTGATCAACAGCAACAACC |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch05_At.05 | N/A | 85.9 | NAU4031 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 20 | NAU4031 | View |
3 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch05_At.05 | N/A | 113.1 | NAU4031 | View |
4 | Yumian-1 x 7235, RIL (2015) | AD_ch05_At.05 | N/A | 94.6 | NAU4031 | View |
5 | W10 x TM-1, F2:3 (2015) | AD_ch05_At.05 | N/A | 34.8 | NAU4031 | View |
6 | 0-153 x sGK9708, RIL (2016) | AD_ch05_At.05 | N/A | 97.6 | NAU4031 | View |
7 | 0-153 x sGK9708, RIL (2017) | AD_ch05_At.05 | N/A | 62.45 | NAU4031 | View |
8 | MGG-293-793, MAGIC (2018) | AD_ch02_At.02 | N/A | 175.1 | NAU4031 | View |
9 | MGG-293-793, MAGIC (2018) | AD_ch05_At.05 | N/A | 175.1 | NAU4031 | View |
10 | 901-001 x sGK156, F2 (2019) | AD_ch05_At.05 | N/A | 0 | NAU4031b | View |
11 | 901-001 x sGK156, F2 (2019) | AD_ch05_At.05 | N/A | 5.93 | NAU4031a | View |
Sequence
>NAU4031 ID=NAU4031; Name=NAU4031; organism=Gossypium raimondii; type=genetic_marker; length=247bp TAATGCTAGGTTGCTGGACAGGCATGTTGTAAGCTTGAGGCTGCCTCGCG GACACATAATACAGGGGATATTGCTGATCAATCTGTGTTTGATGATGGTG ATGTTGCTGTTGGGAAGGATATACAGGATAATAAGCTGAGATCGGCACTG CCCCAGACTGGTGATGATGAATGTAATGCGGTGCACCAGCAGCATGCAAG AACTGCTGCTGCTGCTGCTGCTGCTGTGGTTGTTGCTGTTGATCAAA
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