NAU3991, NAU3991 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3991
Genbank IDCO127902
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(gtt)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU3991_F: TCCTCCCGGGTTTTACTAAT
Primer 2NAU3991_R: CCACATCGACATTCAAACAT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO127902
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:63214006..63214235 -
D13chromosomeD13:63177553..63177782 -
A13chromosomeA13:103276796..103277029 -
CM018227.1chromosomeCM018227.1:58810072..58810300 -
D5_13chromosomeD5_13:57654618..57654848 -
D10_13chromosomeD10_13:59605012..59605243 -
At_chr4chromosomeAt_chr4:37759280..37759509 +
At_chr4chromosomeAt_chr4:37795602..37795831 +
At_chr6chromosomeAt_chr6:45420291..45420525 -
D13chromosomeD13:58999743..58999972 -
D13chromosomeD13:58963317..58963546 -
A13chromosomeA13:78724910..78725144 -
Ghir_D13chromosomeGhir_D13:61758377..61758606 -
Ghir_D13chromosomeGhir_D13:61721943..61722172 -
Ghir_A13chromosomeGhir_A13:107012516..107012751 -
D13chromosomeD13:62956965..62957194 -
D13chromosomeD13:62920814..62921043 -
D13chromosomeD13:62337715..62337944 -
D13chromosomeD13:62301246..62301475 -
A13chromosomeA13:107338379..107338612 -
D13chromosomeD13:58596036..58596265 -
D13chromosomeD13:58559563..58559792 -
A13chromosomeA13:106057397..106057631 -
scaffold50836supercontigscaffold50836:5776..6005 +
Gbar_D13chromosomeGbar_D13:58730968..58731196 -
D13chromosomeD13:59701767..59701995 -
CM017635.1chromosomeCM017635.1:59794028..59794256 -
CM017635.1chromosomeCM017635.1:59757580..59757809 -
CM017622.1chromosomeCM017622.1:109125726..109125961 -
CM017661.1chromosomeCM017661.1:63028190..63028412 -
CM017648.1chromosomeCM017648.1:114423078..114423305 -
CM017713.1chromosomeCM017713.1:59504616..59504844 -
CM017713.1chromosomeCM017713.1:59468259..59468487 -
CM017700.1chromosomeCM017700.1:109169085..109169319 -
D13chromosomeD13:63503404..63503633 -
D13chromosomeD13:63466932..63467161 -
A13chromosomeA13:110350679..110350912 -
Chr13chromosomeChr13:121439506..121439747 -
Chr13chromosomeChr13:57629607..57629837 -
B_13chromosomeB_13:2468569..2468792 +
Chr13chromosomeChr13:58979901..58980129 -
Chr13chromosomeChr13:58939519..58939731 -
chr13chromosomechr13:44110212..44110437 -
Chr_13chromosomeChr_13:42864747..42865105 -
Chr13chromosomeChr13:61894509..61894733 -
Chr13chromosomeChr13:41606105..41606332 -
Chr13chromosomeChr13:32173528..32173764 -
Chr13chromosomeChr13:40542878..40543115 -
F13chromosomeF13:94717226..94717459 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch13_At.13N/A21.73NAU3991aView
2Emian-22 x 3-79, BC1 (2011)AD_ch18_Dt.13N/A8.82NAU3991bView
3AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A2nau3991View
4Li2 x DP5690, F2 (2011)AD_ch18_Dt.13N/A0.87nau3991View
5Yumian-1 x T586, RIL (2015)AD_ch18_Dt.13N/A101.7nau3991View
6Yumian-1 x 7235, RIL (2015)AD_ch18_Dt.13N/A58.3nau3991View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A14.5nau3991View
8TM-1 x Hai-7124, BC1 (2007)AD_ch18_Dt.13N/A2.5NAU3991-230View
9TM-1 x Hai-7124, BC1 (2008)AD_ch18_Dt.13N/A2.54NAU3991-230View
10TM-1 x Hai-7124, BC1 (2012)AD_ch18_Dt.13N/A95.9NAU3991-230View
Sequence
>NAU3991 ID=NAU3991; Name=NAU3991; organism=Gossypium raimondii; type=genetic_marker; length=231bp
TCCTCCCGGGTTTTACTAATTGTAAGTATGTTGAGCTTTTAACGATTATC
ATGTCCCATAAGTTTGTATTAGTAGGACATGATTGTTTTGATTTTGCATT
GGTGTTTTTCATCTTTTTTTCCCGCTTAAAAATACCAAGGCATTGTTTTT
TTTTTTGTTGTTGTTGTTGTTGTTTCCCTTTTGAATTGACTAAATTTATT
TAGGACAAACAATGTTTGAATGTCGATGTGG