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Marker Overview
| Name | NAU3901 |
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| Genbank ID | CO124021 |
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| Type | SSR |
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| Species | Gossypium raimondii |
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| Source Type | EST |
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| Repeat Motif | (gtat)12 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU3901_F: AAGACAAAAGGCAAGGACAC |
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| Primer 2 | NAU3901_R: CTTGGAAAAAGGAAGAGCAG |
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| Restriction Enzyme | NotI; EcoRV |
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| Publication | [view all] |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 18 | nau3901 | View |
| 2 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch15_Dt.01 | N/A | 37.8 | nau3901 | View |
| 3 | Yumian-1 x T586, RIL (2015) | AD_ch15_Dt.01 | N/A | 119 | nau3901 | View |
| 4 | Prema x 86-1, RIL (2015) | AD_ch15_Dt.01 | N/A | 42.21 | nau3901 | View |
| 5 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch15_Dt.01 | N/A | 133.4 | nau3901 | View |
| 6 | GX1135 x GX100-2, F2 (2013) | AD_ch01_At.01 | N/A | 218.6 | nau3901 | View |
| 7 | 0-153 x sGK9708, RIL (2016) | AD_ch15_Dt.01 | N/A | 107.7 | nau3901 | View |
| 8 | TM-1 x Hai-7124, BC1 (2007) | AD_ch15_Dt.01 | N/A | 117.3 | NAU3901-280 | View |
| 9 | TM-1 x Hai-7124, BC1 (2008) | AD_ch15_Dt.01 | N/A | 115.53 | NAU3901-280 | View |
| 10 | TM-1 x Hai-7124, BC1 (2012) | AD_ch15_Dt.01 | N/A | 7.3 | NAU3901-280 | View |
| 11 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch01_At.01 | N/A | 28.9 | NAU3901b | View |
| 12 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch15_Dt.01 | N/A | 124.5 | NAU3901a | View |
| 13 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch01_At.01 | N/A | 100.91 | NAU3901 | View |
| 14 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch15_Dt.01 | N/A | 115.43 | NAU3901 | View |
| 15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch01_At.01 | N/A | 13.9 | NAU3901-245 | View |
Sequence
>NAU3901 ID=NAU3901; Name=NAU3901; organism=Gossypium raimondii; type=genetic_marker; length=246bp
AAGACAAAAGGCAAGGACACATCCTTTTGGATATGCTTGTTGAAAATTTT
CATTTCATCCAATATGTTAAATTCTCCATCTTAGTGAATAGCAAATATAT
ATATACGTGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAT
GTATGTATTGTCTTGTGGTCAGTGGTTTATTCTTTTTTTCTTTCTCAACA
TTCTCATTCTGTTGGTGTATAAAATTCTGCTCTTCCTTTTTCCAAG
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