NAU3828, NAU3828 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3828
Genbank IDCO121392
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ta)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU3828_F: CTCCTGAGCTGAAGAAAAGC
Primer 2NAU3828_R: AGGAACCGATTCAAAGCTAA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO121392
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:3224839..3225084 +
A05chromosomeA05:3583015..3583268 +
CM018219.1chromosomeCM018219.1:3011258..3011507 +
CM018206.1chromosomeCM018206.1:3542640..3542889 +
D5_05chromosomeD5_05:2832528..2832775 +
KI_05chromosomeKI_05:2594769..2595011 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:3467781..3468040 +
D10_05chromosomeD10_05:57666094..57666337 -
CM016626.1chromosomeCM016626.1:4955205..4955452 +
Dt_chr9chromosomeDt_chr9:66326754..66326999 -
At_chr9chromosomeAt_chr9:50754622..50754895 -
scaffold1240_A05supercontigscaffold1240_A05:59390..59643 +
D05chromosomeD05:3063990..3064235 +
Ghir_D05chromosomeGhir_D05:3199524..3199769 +
Ghir_A05chromosomeGhir_A05:3583267..3583524 +
D05chromosomeD05:2999700..2999945 +
A05chromosomeA05:3458597..3458850 +
D05chromosomeD05:3109726..3109971 +
A05chromosomeA05:3557383..3557636 +
D05chromosomeD05:2970028..2970273 +
A05chromosomeA05:3961921..3962174 +
scaffold3667supercontigscaffold3667:33097..33346 +
scaffold10000supercontigscaffold10000:477857..478106 -
Gbar_D05chromosomeGbar_D05:3100419..3100668 +
Gbar_A05chromosomeGbar_A05:3232103..3232352 +
D05chromosomeD05:3251467..3251716 +
A05chromosomeA05:3713277..3713526 +
CM017627.1chromosomeCM017627.1:3081372..3081615 +
CM017614.1chromosomeCM017614.1:3544935..3545182 +
CM017653.1chromosomeCM017653.1:3247058..3247303 +
CM017640.1chromosomeCM017640.1:3609766..3610013 +
CM017705.1chromosomeCM017705.1:3072585..3072836 +
CM017692.1chromosomeCM017692.1:3510219..3510466 +
D05chromosomeD05:3134193..3134438 +
A05chromosomeA05:3666735..3666988 +
Chr05chromosomeChr05:3769981..3770236 +
Chr05chromosomeChr05:3324386..3324646 +
Chr05chromosomeChr05:2837973..2838220 +
B_05chromosomeB_05:82715348..82715609 -
Chr09chromosomeChr09:2970404..2970647 +
chr09chromosomechr09:2800834..2801083 +
Chr_09chromosomeChr_09:3123396..3123749 +
Chr09chromosomeChr09:3044554..3044817 +
Chr09chromosomeChr09:2823744..2823994 +
Chr09chromosomeChr09:2250456..2250697 +
Chr09chromosomeChr09:2785938..2786183 +
E05chromosomeE05:3837671..3837919 +
F05chromosomeF05:3003428..3003686 +
Chr13chromosomeChr13:195150340..195150601 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch19_Dt.05N/A0NAU3828View
2Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A37.64NAU3828View
3AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A25NAU3828View
4AD-genome wide Reference Map (2009)AD_ch05_At.05N/A13NAU3828View
5Zhongmiansuo-12 x 8891, RIL (2007)AD_ch05_At.05N/A4.8NAU3828View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch19_Dt.05N/A17.9NAU3828View
7Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A43.9NAU3828View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A21.9NAU3828View
9SG 747 x Giza 75, BIL (2013)AD_ch05_At.05N/A7NAU3828View
10CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A119.6NAU3828View
11TM-1 x Hai-7124, BC1 (2007)AD_ch05_At.05N/A24.1NAU3828-260View
12TM-1 x Hai-7124, BC1 (2008)AD_ch05_At.05N/A19.57NAU3828-260View
13TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A190NAU3828-260View
14CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A17.6NAU3828View
Sequence
>NAU3828 ID=NAU3828; Name=NAU3828; organism=Gossypium raimondii; type=genetic_marker; length=249bp
CTCCTGAGCTGAAGAAAAGCGCTGCTGATAGTGTTCCATTGGAGCCCATC
CCCCGTATTTTCCCCATTTTTGGTTAAGCCTTTAGCGGGGAGGAACCCTT
TTTTGGAGTTATTTGTGCCATGTTTTTGTTGACATTGGGACCATTTTTTT
TGTTTTTTTGTTTTGGATATATATATATATAACTGGGAACAAGCTATTTT
AGGATAGACTTGTCAAGCTCCCCCAAAGATTAGCTTTGAATCGGTTCCT