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Marker Overview
Name | NAU3828 |
Genbank ID | CO121392 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (ta)7 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU3828_F: CTCCTGAGCTGAAGAAAAGC |
Primer 2 | NAU3828_R: AGGAACCGATTCAAAGCTAA |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch19_Dt.05 | N/A | 0 | NAU3828 | View |
2 | Emian-22 x 3-79, BC1 (2011) | AD_ch05_At.05 | N/A | 37.64 | NAU3828 | View |
3 | AD-genome wide Reference Map (2009) | AD_ch19_Dt.05 | N/A | 25 | NAU3828 | View |
4 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 13 | NAU3828 | View |
5 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_ch05_At.05 | N/A | 4.8 | NAU3828 | View |
6 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch19_Dt.05 | N/A | 17.9 | NAU3828 | View |
7 | Yumian-1 x 7235, RIL (2015) | AD_ch05_At.05 | N/A | 43.9 | NAU3828 | View |
8 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch05_At.05 | N/A | 21.9 | NAU3828 | View |
9 | SG 747 x Giza 75, BIL (2013) | AD_ch05_At.05 | N/A | 7 | NAU3828 | View |
10 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch05_At.05 | N/A | 119.6 | NAU3828 | View |
11 | TM-1 x Hai-7124, BC1 (2007) | AD_ch05_At.05 | N/A | 24.1 | NAU3828-260 | View |
12 | TM-1 x Hai-7124, BC1 (2008) | AD_ch05_At.05 | N/A | 19.57 | NAU3828-260 | View |
13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch05_At.05 | N/A | 190 | NAU3828-260 | View |
14 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch05_At.05 | N/A | 17.6 | NAU3828 | View |
Sequence
>NAU3828 ID=NAU3828; Name=NAU3828; organism=Gossypium raimondii; type=genetic_marker; length=249bp CTCCTGAGCTGAAGAAAAGCGCTGCTGATAGTGTTCCATTGGAGCCCATC CCCCGTATTTTCCCCATTTTTGGTTAAGCCTTTAGCGGGGAGGAACCCTT TTTTGGAGTTATTTGTGCCATGTTTTTGTTGACATTGGGACCATTTTTTT TGTTTTTTTGTTTTGGATATATATATATATAACTGGGAACAAGCTATTTT AGGATAGACTTGTCAAGCTCCCCCAAAGATTAGCTTTGAATCGGTTCCT
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