NAU3778, NAU3778 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3778
Genbank IDCO119461
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(gata)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU3778_F: GAGAAGCAGCCACTCATGTA
Primer 2NAU3778_R: CCCCACCCTATGATGAATAA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO119461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:61468165..61468390 +
A12chromosomeA12:100452879..100453100 +
CM018226.1chromosomeCM018226.1:57568767..57568988 +
CM018213.1chromosomeCM018213.1:97262976..97263213 +
D5_12chromosomeD5_12:2184991..2185212 -
CM016625.1chromosomeCM016625.1:2976923..2977135 -
Dt_chr8chromosomeDt_chr8:55087533..55087758 +
scaffold304.1supercontigscaffold304.1:24144..24369 -
A12chromosomeA12:85473461..85473682 +
scaffold4580_D12supercontigscaffold4580_D12:21698..21923 -
Ghir_D12chromosomeGhir_D12:60305237..60305462 +
Ghir_A12chromosomeGhir_A12:105172457..105172678 +
D12chromosomeD12:59477568..59477793 +
A12chromosomeA12:105247710..105247931 +
D12chromosomeD12:60371538..60371763 +
A12chromosomeA12:103311554..103311779 +
D12chromosomeD12:58420077..58420302 +
A12chromosomeA12:100232690..100232911 +
scaffold14106supercontigscaffold14106:11003..11240 +
scaffold3212supercontigscaffold3212:87253..87474 -
Gbar_D12chromosomeGbar_D12:56799583..56799804 +
Gbar_A12chromosomeGbar_A12:99756640..99756877 +
D12chromosomeD12:58589919..58590140 +
A12chromosomeA12:99312445..99312678 +
CM017634.1chromosomeCM017634.1:58468924..58469157 +
CM017621.1chromosomeCM017621.1:100490220..100490441 +
CM017660.1chromosomeCM017660.1:61401819..61402052 +
CM017647.1chromosomeCM017647.1:104311210..104311443 +
CM017712.1chromosomeCM017712.1:59097545..59097758 +
CM017699.1chromosomeCM017699.1:99628586..99628803 +
D12chromosomeD12:60856374..60856599 +
A12chromosomeA12:106904880..106905101 +
Chr12chromosomeChr12:107928814..107929035 +
Chr12chromosomeChr12:55555324..55555545 +
B_12chromosomeB_12:85345364..85345577 -
Chr08chromosomeChr08:55960088..55960301 +
chr08chromosomechr08:43648508..43648729 +
Chr08_2637795chromosomeChr08_2637795:1377..1602 -
Chr08chromosomeChr08:57555822..57556039 +
Chr08chromosomeChr08:40461244..40461465 +
Chr08chromosomeChr08:31777682..31777919 +
Chr08chromosomeChr08:38910040..38910257 +
E12chromosomeE12:111621742..111621954 +
F12chromosomeF12:89188032..89188249 +
Chr12chromosomeChr12:171598880..171599092 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch12_At.12N/A82.9NAU3778View
2Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A195.1NAU3778View
3AD-genome wide Reference Map (2009)AD_ch12_At.12N/A16NAU3778View
4TM-1 x Hai-1, F2 (2007 Gl2 fine)AD_ch12_At.12N/A0NAU3778View
5TM-1 x Hai-1, F2 (2007 Gl2)AD_ch12_At.12N/A47.38NAU3778View
6DH962 X Ji Mian 5, F2 (2015)AD_ch12_At.12N/A0NAU3778View
7DH962 x Ji Mian 5, RIL (2015)AD_ch12_At.12N/A21.2NAU3778View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A150.6NAU3778View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A15.3NAU3778View
10SG 747 x Giza 75, BIL (2013)AD_ch12_At.12N/A95.2NAU3778View
11TM-1 x Hai-7124, BC1 (2008)AD_ch12_At.12N/A132.53NAU3778-230View
12TM-1 x Hai-7124, BC1 (2007)AD_ch12_At.12N/A95.9NAU3778-230View
13TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A131.9NAU3778-230View
140-153 x sGK9708, RIL (2016)AD_ch12_At.12N/A93.3NAU3778aView
150-153 x sGK9708, RIL (2017)AD_ch12_At.12N/A101.1NAU3778aView
160-153 x sGK9708, RIL (2016)AD_ch12_At.12N/A0NAU3778cView
17PD 94042 x (AD)4-08, F2 (2016)AD_ch12_At.12N/A222NAU3778View
Sequence
>NAU3778 ID=NAU3778; Name=NAU3778; organism=Gossypium raimondii; type=genetic_marker; length=222bp
GAGAAGCAGCCACTCATGTAGCAACTAAGGGCACCCCCAATTTTTTTATA
TGGGTTTTCATACTTGATAGATAGATAGATAGATAGATAGATGCTATTAC
ATATGAGTGGGTCTGAAAGGAGGGATGCCACCCTGGCCAGGCATTTGCAT
CATTCCCGGAGATATTTGCGGCATTGAGGCTGGTGGTATGTAAGGATTAT
GATTATTCATCATAGGGTGGGG