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Marker Overview
Name | NAU3778 |
Genbank ID | CO119461 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (gata)6 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU3778_F: GAGAAGCAGCCACTCATGTA |
Primer 2 | NAU3778_R: CCCCACCCTATGATGAATAA |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch12_At.12 | N/A | 82.9 | NAU3778 | View |
2 | Emian-22 x 3-79, BC1 (2011) | AD_ch12_At.12 | N/A | 195.1 | NAU3778 | View |
3 | AD-genome wide Reference Map (2009) | AD_ch12_At.12 | N/A | 16 | NAU3778 | View |
4 | TM-1 x Hai-1, F2 (2007 Gl2 fine) | AD_ch12_At.12 | N/A | 0 | NAU3778 | View |
5 | TM-1 x Hai-1, F2 (2007 Gl2) | AD_ch12_At.12 | N/A | 47.38 | NAU3778 | View |
6 | DH962 X Ji Mian 5, F2 (2015) | AD_ch12_At.12 | N/A | 0 | NAU3778 | View |
7 | DH962 x Ji Mian 5, RIL (2015) | AD_ch12_At.12 | N/A | 21.2 | NAU3778 | View |
8 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch12_At.12 | N/A | 150.6 | NAU3778 | View |
9 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch26_Dt.12 | N/A | 15.3 | NAU3778 | View |
10 | SG 747 x Giza 75, BIL (2013) | AD_ch12_At.12 | N/A | 95.2 | NAU3778 | View |
11 | TM-1 x Hai-7124, BC1 (2008) | AD_ch12_At.12 | N/A | 132.53 | NAU3778-230 | View |
12 | TM-1 x Hai-7124, BC1 (2007) | AD_ch12_At.12 | N/A | 95.9 | NAU3778-230 | View |
13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch12_At.12 | N/A | 131.9 | NAU3778-230 | View |
14 | 0-153 x sGK9708, RIL (2016) | AD_ch12_At.12 | N/A | 93.3 | NAU3778a | View |
15 | 0-153 x sGK9708, RIL (2017) | AD_ch12_At.12 | N/A | 101.1 | NAU3778a | View |
16 | 0-153 x sGK9708, RIL (2016) | AD_ch12_At.12 | N/A | 0 | NAU3778c | View |
17 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch12_At.12 | N/A | 222 | NAU3778 | View |
Sequence
>NAU3778 ID=NAU3778; Name=NAU3778; organism=Gossypium raimondii; type=genetic_marker; length=222bp GAGAAGCAGCCACTCATGTAGCAACTAAGGGCACCCCCAATTTTTTTATA TGGGTTTTCATACTTGATAGATAGATAGATAGATAGATAGATGCTATTAC ATATGAGTGGGTCTGAAAGGAGGGATGCCACCCTGGCCAGGCATTTGCAT CATTCCCGGAGATATTTGCGGCATTGAGGCTGGTGGTATGTAAGGATTAT GATTATTCATCATAGGGTGGGG
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