NAU3639, NAU3639 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3639
Genbank IDCO114796
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(at)8
PCR ConditionAnnealing temperature: 57
Primer 1NAU3639_F: TGCAAAATCTGCCTTCAATA
Primer 2NAU3639_R: CCAGTCACCAAGACAAATGA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO114796
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A03chromosomeA03:23327193..23327358 +
D03chromosomeD03:35082476..35082645 -
CM018204.1chromosomeCM018204.1:22344656..22344825 +
CM018217.1chromosomeCM018217.1:35737330..35737501 -
D5_02chromosomeD5_02:29718607..29718773 -
KI_2_4chromosomeKI_2_4:32696730..32696896 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:89139588..89139756 -
D10_02chromosomeD10_02:34205052..34205218 -
CM016615.1chromosomeCM016615.1:80878543..80878714 -
Dt_chr3chromosomeDt_chr3:16391805..16391974 +
At_chr12chromosomeAt_chr12:88297910..88298075 -
A03chromosomeA03:21636232..21636397 +
D03chromosomeD03:29218495..29218664 -
Ghir_A03chromosomeGhir_A03:23810003..23810164 +
Ghir_D03chromosomeGhir_D03:35140193..35140361 -
A03chromosomeA03:22722658..22722823 +
D03chromosomeD03:36736719..36736888 -
A03chromosomeA03:23460977..23461142 +
D03chromosomeD03:36078946..36079115 -
D03chromosomeD03:35504619..35504788 -
At03chromosomeAt03:23194499..23194668 +
At03chromosomeAt03:23181387..23181556 +
scaffold4802supercontigscaffold4802:149376..149547 +
scaffold3521supercontigscaffold3521:196400..196569 +
scaffold2432supercontigscaffold2432:11995..12164 +
Gbar_A03chromosomeGbar_A03:22263368..22263537 +
Gbar_D03chromosomeGbar_D03:34151438..34151609 -
A03chromosomeA03:22297657..22297824 +
D03chromosomeD03:36730899..36731070 -
CM017612.1chromosomeCM017612.1:22704158..22704325 +
CM017625.1chromosomeCM017625.1:35123821..35123988 -
CM017638.1chromosomeCM017638.1:23320937..23321109 +
CM017651.1chromosomeCM017651.1:39017721..39017884 -
CM017690.1chromosomeCM017690.1:22471719..22471888 +
CM017703.1chromosomeCM017703.1:36678274..36678441 -
D03chromosomeD03:37152866..37153035 -
A03chromosomeA03:24033652..24033817 -
Chr02chromosomeChr02:18175050..18175220 -
Chr01chromosomeChr01:95106707..95106877 +
Chr02chromosomeChr02:31804401..31804567 -
B_04chromosomeB_04:21092740..21092918 +
Chr03chromosomeChr03:33310738..33310907 -
Chr03chromosomeChr03:35087759..35087925 -
Chr03chromosomeChr03:10959970..10960149 +
Chr03chromosomeChr03:11658786..11659066 +
E02chromosomeE02:62742554..62742728 -
F02chromosomeF02:56773785..56773962 -
Chr02chromosomeChr02:40728878..40729064 +
Chr03chromosomeNAU3639:1..629 .
Chr03:16506976..16507826 +
Chr1chromosomeNAU3639:1..629 .
Chr1:32774137..32774987 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch17_Dt.03N/A81.27NAU3639View
2AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A89NAU3639View
3AD-genome wide Reference Map (2009)AD_ch03_At.03N/A22NAU3639View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch03_At.03N/A23.9NAU3639View
5T582 x Hai-7124, F2 (2010)AD_ch03_At.03N/A85.9NAU3639View
6Yumian-1 x 7235, RIL (2015)AD_ch03_At.03N/A55.4NAU3639View
7DH962 X Ji Mian 5, F2 (2015)AD_ch07_At.07N/A19.57NAU3639View
8DH962 x Ji Mian 5, RIL (2015)AD_ch03_At.03N/A5.2NAU3639View
9LMY22 x LY343, RIL (2016)chr.3N/A115NAU3639View
10TM-1 x Hai-7124, BC1 (2007)AD_ch03_At.03N/A85.9NAU3639-305View
11TM-1 x Hai-7124, BC1 (2008)AD_ch03_At.03N/A83.33NAU3639-305View
12TM-1 x Hai-7124, BC1 (2012)AD_ch03_At.03N/A81.3NAU3639-305View
13TM-1 x Hai-7124, BC1 (2007)AD_ch17_Dt.03N/A70NAU3639-180View
14TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A29.65NAU3639-180View
15TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A68.3NAU3639-180View
16SG 747 x Giza 75, BIL (2013)AD_ch17_Dt.03N/A12.9NAU3639aView
17SG 747 x Giza 75, BIL (2013)AD_ch03_At.03N/A78.5NAU3639bView
18PD 94042 x (AD)4-08, F2 (2016)AD_ch17_Dt.03N/A67.2NAU3639View
Sequence
>NAU3639 ID=NAU3639; Name=NAU3639; organism=Gossypium raimondii; type=genetic_marker; length=167bp
TGCAAAATCTGCCTTCAATATAATCCGAGAGAGATACCAAGAATGGAAAA
CCAAATATTTATTTATATAATATATATATATATATAAACTATCTCATGTT
ACAACATTGAGGCCTTGTCTGCTTTTGCAACTTGTCCCACATGCACATCA
TTTGTCTTGGTGACTGG