NAU3592, NAU3592 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3592
Genbank IDCO112840
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(at)8
PCR ConditionAnnealing temperature: 57
Primer 1NAU3592_F: CATCTTCAATTTCACCCACA
Primer 2NAU3592_R: TGAAAGGCAACTCCACAATA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO112840
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A04chromosomeA04:1765056..1765217 +
D05chromosomeD05:61983137..61983295 -
CM018205.1chromosomeCM018205.1:1816929..1817086 +
CM018219.1chromosomeCM018219.1:60678667..60678823 -
D5_05chromosomeD5_05:55109619..55109775 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:95533832..95533989 +
D10_05chromosomeD10_05:1595902..1596062 +
CM016618.1chromosomeCM016618.1:1316221..1316387 +
scaffold4544.1supercontigscaffold4544.1:188..346 +
scaffold743.1supercontigscaffold743.1:194774..194935 -
A04chromosomeA04:1737745..1737906 +
D05chromosomeD05:59556719..59556877 -
Ghir_A04chromosomeGhir_A04:2377458..2377618 +
Ghir_D05chromosomeGhir_D05:61002977..61003136 -
A04chromosomeA04:1683255..1683416 +
D05chromosomeD05:61667516..61667674 -
A04chromosomeA04:1763600..1763761 +
D05chromosomeD05:61680336..61680494 -
A04chromosomeA04:1701766..1701929 +
D05chromosomeD05:60297466..60297624 -
At04chromosomeAt04:1288394..1288551 +
Dt05chromosomeDt05:59313515..59313671 -
Dt05chromosomeDt05:59311609..59311765 -
scaffold1811supercontigscaffold1811:463668..463825 +
scaffold4057supercontigscaffold4057:190055..190211 -
scaffold4057supercontigscaffold4057:188149..188305 -
Gbar_A04chromosomeGbar_A04:1867714..1867871 +
Gbar_D05chromosomeGbar_D05:61959016..61959172 -
A04chromosomeA04:1715488..1715645 +
D05chromosomeD05:64555992..64556148 -
CM017613.1chromosomeCM017613.1:1889882..1890037 +
CM017627.1chromosomeCM017627.1:60899113..60899269 -
CM017639.1chromosomeCM017639.1:1997028..1997185 +
CM017653.1chromosomeCM017653.1:63871505..63871663 -
CM017691.1chromosomeCM017691.1:2006419..2006576 +
CM017705.1chromosomeCM017705.1:62041408..62041564 -
A04chromosomeA04:1778868..1779029 +
D05chromosomeD05:64137661..64137819 -
Chr05chromosomeChr05:92964587..92964748 -
Chr05chromosomeChr05:55531817..55531973 -
B_05chromosomeB_05:11440095..11440263 -
Chr09chromosomeChr09:56451753..56451915 -
Chr_09chromosomeChr_09:51121191..51121357 -
Chr09chromosomeChr09:61487659..61487817 -
Chr09chromosomeChr09:50528809..50528974 -
Chr09chromosomeChr09:41590949..41591107 -
Chr09chromosomeChr09:52034571..52034727 -
F05chromosomeF05:74883111..74883270 -
Chr05chromosomeChr05:12434250..12434417 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch19_Dt.05N/A9.4NAU3592View
2Emian-22 x 3-79, BC1 (2011)AD_ch04_At.04N/A119.27NAU3592View
3AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A317NAU3592View
4AD-genome wide Reference Map (2009)AD_ch04_At.04N/A152NAU3592View
5Zhongmiansuo-12 x 8891, RIL (2007)AD_chUN/A20.3NAU3592View
6Yumian-1 x 7235, RIL (2015)AD_ch19_Dt.05N/A102.9NAU3592View
7DH962 X Ji Mian 5, F2 (2015)AD_ch04_At.04N/A71.34NAU3592View
8W10 x TM-1, F2:3 (2015)AD_ch04_At.04N/A15.8NAU3592View
9DH962 x Ji Mian 5, RIL (2015)AD_ch04_At.04N/A72.9NAU3592View
10CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch04_At.04N/A23.1NAU3592View
11TM-1 x Hai-7124, BC1 (2007)AD_ch04_At.04N/A13.1NAU3592-190View
12TM-1 x Hai-7124, BC1 (2008)AD_ch04_At.04N/A13.69NAU3592-190View
13TM-1 x Hai-7124, BC1 (2012)AD_ch04_At.04N/A115.8NAU3592-190View
Sequence
>NAU3592 ID=NAU3592; Name=NAU3592; organism=Gossypium raimondii; type=genetic_marker; length=157bp
CATCTTCAATTTCACCCACAATCATGAAAAAGGGAGAAATATCCGTCAAA
AAGTGTAATGAAAAAAAGCCACTAATTTTGTGGATATATATATATATATA
AAAGAAGCAAAAGCTTTATGGCTTAACTAATGGCACTTATTGTGGAGTTG
CCTTTCA