NAU3486, NAU3486 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3486
Genbank IDCO108424
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(tttat)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU3486_F: CTTCTGCACCATCCTCTTTT
Primer 2NAU3486_R: CCCCTCAACAGATTGAAGTT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO108424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:1240103..1240300 +
A07chromosomeA07:1276471..1276678 +
CM018221.1chromosomeCM018221.1:1052103..1052450 +
CM018208.1chromosomeCM018208.1:1446723..1446930 +
D5_07chromosomeD5_07:1088750..1088956 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:1352234..1352441 +
D10_07chromosomeD10_07:52731636..52731853 -
CM016620.1chromosomeCM016620.1:114364878..114365086 -
scaffold666.1supercontigscaffold666.1:509014..509211 -
D07chromosomeD07:1226521..1226718 +
A07chromosomeA07:1233314..1233521 +
Ghir_D07chromosomeGhir_D07:1223644..1223841 +
Ghir_A07chromosomeGhir_A07:1264253..1264460 +
D07chromosomeD07:1168807..1169004 +
A07chromosomeA07:1201157..1201364 +
D07chromosomeD07:1215289..1215486 +
A07chromosomeA07:1268502..1268709 +
D07chromosomeD07:1132653..1132850 +
A07chromosomeA07:1287431..1287638 +
scaffold5365supercontigscaffold5365:129236..129437 -
scaffold23414supercontigscaffold23414:120610..120817 -
Gbar_D07chromosomeGbar_D07:1198001..1198348 +
Gbar_A07chromosomeGbar_A07:1317529..1317736 +
D07chromosomeD07:1175212..1175559 +
A07chromosomeA07:1257852..1258059 +
CM017629.1chromosomeCM017629.1:73507..73854 +
CM017655.1chromosomeCM017655.1:1181321..1181527 +
CM017642.1chromosomeCM017642.1:1225096..1225303 +
CM017707.1chromosomeCM017707.1:1172812..1173159 +
CM017694.1chromosomeCM017694.1:1341988..1342195 +
D07chromosomeD07:1242956..1243153 +
A07chromosomeA07:1293885..1294092 +
Chr07chromosomeChr07:1281698..1281905 +
Chr07chromosomeChr07:1327620..1327827 +
Chr07chromosomeChr07:52442442..52442649 -
B_07chromosomeB_07:1434251..1434458 +
Chr01chromosomeChr01:1075197..1075404 +
chr01chromosomechr01:1127446..1127778 +
Chr_01chromosomeChr_01:1091933..1092150 +
Chr01chromosomeChr01:853296..853508 +
Chr01chromosomeChr01:834371..834588 +
Chr01chromosomeChr01:944020..944222 +
E07chromosomeE07:93021012..93021205 -
F07chromosomeF07:1169027..1169234 +
Chr07chromosomeChr07:1194849..1195057 +
Chr01chromosomeNAU3486:2..692 .
Chr01:1071405..1072095 -
Chr1chromosomeNAU3486:2..692 .
Chr1:34617224..34617914 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A4NAU3486View
2Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A149.95NAU3486View
3Yumian-1 x T586, RIL (2006)AD_ch16_Dt.07N/A53.8NAU3486View
4Yumian-1 x T586, RIL (2015)AD_ch16_Dt.07N/A0NAU3486View
5Yumian-1 x 7235, RIL (2015)AD_ch16_Dt.07N/A75NAU3486View
6TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch16_Dt.07N/A135NAU3486View
7SG 747 x Giza 75, BIL (2013)AD_ch16_Dt.07N/A1.6NAU3486View
8CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A21.3NAU3486View
9TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A9.6NAU3486-245View
10TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A9.36NAU3486-245View
11H16 x T586, F2 (2009)AD_ch16_Dt.07N/A9.4NAU3486-245View
12TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A122.2NAU3486-245View
13Yumian-1 x T586, RIL (2009)AD_ch16_Dt.07N/A0NAU3486/200t(C16)View
14CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A2.88NAU3486View
Sequence
>NAU3486 ID=NAU3486; Name=NAU3486; organism=Gossypium raimondii; type=genetic_marker; length=208bp
CTTCTGCACCATCCTCTTTTTACTAATTTTCGGCTTGAATGTTGCTTTTT
TATTTTATTTTATTTTATAAAATAGGGTTCCAAGATTGGTTGCCTTTTGA
ATGCTTGTCAAGCATTCTCCATAGCTGATGCTCTCTTGACATCTTTGGAA
TAATTCTTCTCCTCATTCACATCACTTTCTTTCTGTTTAACTTCAATCTG
TTGAGGGG