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Marker Overview
Name | NAU3486 |
Genbank ID | CO108424 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (tttat)4 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU3486_F: CTTCTGCACCATCCTCTTTT |
Primer 2 | NAU3486_R: CCCCTCAACAGATTGAAGTT |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | AD-genome wide Reference Map (2009) | AD_ch16_Dt.07 | N/A | 4 | NAU3486 | View |
2 | Emian-22 x 3-79, BC1 (2011) | AD_ch16_Dt.07 | N/A | 149.95 | NAU3486 | View |
3 | Yumian-1 x T586, RIL (2006) | AD_ch16_Dt.07 | N/A | 53.8 | NAU3486 | View |
4 | Yumian-1 x T586, RIL (2015) | AD_ch16_Dt.07 | N/A | 0 | NAU3486 | View |
5 | Yumian-1 x 7235, RIL (2015) | AD_ch16_Dt.07 | N/A | 75 | NAU3486 | View |
6 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch16_Dt.07 | N/A | 135 | NAU3486 | View |
7 | SG 747 x Giza 75, BIL (2013) | AD_ch16_Dt.07 | N/A | 1.6 | NAU3486 | View |
8 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch16_Dt.07 | N/A | 21.3 | NAU3486 | View |
9 | TM-1 x Hai-7124, BC1 (2007) | AD_ch16_Dt.07 | N/A | 9.6 | NAU3486-245 | View |
10 | TM-1 x Hai-7124, BC1 (2008) | AD_ch16_Dt.07 | N/A | 9.36 | NAU3486-245 | View |
11 | H16 x T586, F2 (2009) | AD_ch16_Dt.07 | N/A | 9.4 | NAU3486-245 | View |
12 | TM-1 x Hai-7124, BC1 (2012) | AD_ch16_Dt.07 | N/A | 122.2 | NAU3486-245 | View |
13 | Yumian-1 x T586, RIL (2009) | AD_ch16_Dt.07 | N/A | 0 | NAU3486/200t(C16) | View |
14 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch16_Dt.07 | N/A | 2.88 | NAU3486 | View |
Sequence
>NAU3486 ID=NAU3486; Name=NAU3486; organism=Gossypium raimondii; type=genetic_marker; length=208bp CTTCTGCACCATCCTCTTTTTACTAATTTTCGGCTTGAATGTTGCTTTTT TATTTTATTTTATTTTATAAAATAGGGTTCCAAGATTGGTTGCCTTTTGA ATGCTTGTCAAGCATTCTCCATAGCTGATGCTCTCTTGACATCTTTGGAA TAATTCTTCTCCTCATTCACATCACTTTCTTTCTGTTTAACTTCAATCTG TTGAGGGG
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