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Marker Overview
Name | NAU3485 |
Genbank ID | CO108192 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (gct)4(gtt)6 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU3485_F: GTTCAAAGTCGGGTTATTGG |
Primer 2 | NAU3485_R: AGTGCAACGGCTTAGGATAC |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Image
File Name | Legend |
48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch02_At.02 | N/A | 70.58 | NAU3485a | View |
2 | Emian-22 x 3-79, BC1 (2011) | AD_ch14_Dt.02 | N/A | 52.11 | NAU3485b | View |
3 | JLZM x ZJXSLS, F2 (2008) | A_JZ_A02 | N/A | 85.3 | NAU3485 | View |
4 | AD-genome wide Reference Map (2009) | AD_ch14_Dt.02 | N/A | 62 | NAU3485 | View |
5 | AD-genome wide Reference Map (2009) | AD_ch02_At.02 | N/A | 139 | NAU3485 | View |
6 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch02_At.02 | N/A | 44.1 | NAU3485 | View |
7 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch14_Dt.02 | N/A | 61.7 | NAU3485 | View |
8 | TM-1 x Hai-7124, BC1 (2007) | AD_ch02_At.02 | N/A | 67 | NAU3485-205 | View |
9 | TM-1 x Hai-7124, BC1 (2008) | AD_ch02_At.02 | N/A | 55.69 | NAU3485-205 | View |
10 | TM-1 x Hai-7124, BC1 (2012) | AD_ch02_At.02 | N/A | 51.6 | NAU3485-205 | View |
11 | TM-1 x Hai-7124, BC1 (2007) | AD_ch14_Dt.02 | N/A | 70.3 | NAU3485-195 | View |
12 | TM-1 x Hai-7124, BC1 (2008) | AD_ch14_Dt.02 | N/A | 70.37 | NAU3485-195 | View |
13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch14_Dt.02 | N/A | 42.5 | NAU3485-195 | View |
14 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch02_At.02 | N/A | 79.7 | NAU3485 | View |
15 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch02_At.02 | N/A | 13.1 | NAU3485b | View |
16 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch02_At.02 | N/A | 14.2 | NAU3485a | View |
Sequence
>NAU3485 ID=NAU3485; Name=NAU3485; organism=Gossypium raimondii; type=genetic_marker; length=202bp GTTCAAAGTCGGGTTATTGGCGGATGAATGAGGCATCTGCAGCTGCTGCT GCTGTTGTTGTTGTTGTTGTTGCGGTGTCTGCAGGACGCCAAAGTGATGT GGAGCAGGTTGGTGGGTTGAATATTGAGGAGATAGTCCTCTATTGAAAGG ATTTCCATTCATAGCAGACACTTGACCAGCTTGTATCCTAAGCCGTTGCA CT
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