NAU3485, NAU3485 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3485
Genbank IDCO108192
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(gct)4(gtt)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU3485_F: GTTCAAAGTCGGGTTATTGG
Primer 2NAU3485_R: AGTGCAACGGCTTAGGATAC
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO108192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:10500684..10500879 +
A02chromosomeA02:11200281..11200488 -
CM018216.1chromosomeCM018216.1:9718417..9718606 +
CM018203.1chromosomeCM018203.1:10502080..10502278 -
D5_03chromosomeD5_03:54253411..54253612 -
KI_03chromosomeKI_03:6458786..6458981 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:11946161..11946371 -
D10_03chromosomeD10_03:55601436..55601636 +
D10_03chromosomeD10_03:55606786..55606984 -
CM016616.1chromosomeCM016616.1:138782108..138782312 +
Dt_chr5chromosomeDt_chr5:50485778..50485973 -
At_chr3chromosomeAt_chr3:41504089..41504296 -
D02chromosomeD02:10184340..10184535 +
A02chromosomeA02:10797181..10797388 -
Ghir_D02chromosomeGhir_D02:10012589..10012784 +
Ghir_A02chromosomeGhir_A02:10767001..10767208 -
D02chromosomeD02:9686377..9686572 +
A02chromosomeA02:10387950..10388157 -
D02chromosomeD02:10054110..10054305 +
A02chromosomeA02:11023291..11023498 -
D02chromosomeD02:10014068..10014263 +
A02chromosomeA02:11003044..11003251 -
Dt02chromosomeDt02:8946775..8946964 +
Dt02chromosomeDt02:8945171..8945340 +
Dt02chromosomeDt02:8952119..8952317 -
Dt02chromosomeDt02:8963919..8964110 -
scaffold5982supercontigscaffold5982:73396..73585 +
scaffold5982supercontigscaffold5982:71792..71961 +
scaffold185supercontigscaffold185:141228..141426 +
scaffold5982supercontigscaffold5982:78740..78938 -
scaffold5982supercontigscaffold5982:90540..90731 -
Gbar_D02chromosomeGbar_D02:10228963..10229152 +
Gbar_A02chromosomeGbar_A02:10604805..10605003 -
D02chromosomeD02:9684023..9684212 +
A02chromosomeA02:10522186..10522384 -
CM017624.1chromosomeCM017624.1:10374203..10374398 +
CM017624.1chromosomeCM017624.1:10379552..10379723 -
CM017611.1chromosomeCM017611.1:10580997..10581192 -
CM017650.1chromosomeCM017650.1:10648227..10648422 +
CM017637.1chromosomeCM017637.1:11055056..11055254 -
CM017702.1chromosomeCM017702.1:10219611..10219806 +
CM017689.1chromosomeCM017689.1:10693780..10693981 -
D02chromosomeD02:10322559..10322754 +
A02chromosomeA02:11110916..11111123 -
Chr03chromosomeChr03:120179032..120179245 +
Chr03chromosomeChr03:118928381..118928591 +
Contig00140chromosomeContig00140:415..616 +
B_03chromosomeB_03:95419014..95419209 +
Chr05chromosomeChr05:10107156..10107351 +
Chr05chromosomeChr05:10112956..10113151 -
Chr05chromosomeChr05:10194009..10194204 +
Chr05chromosomeChr05:10199360..10199554 -
Chr05chromosomeChr05:7383974..7384171 -
Chr05chromosomeChr05:6023033..6023228 -
E03chromosomeE03:13821034..13821229 -
Image
File NameLegend
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A70.58NAU3485aView
2Emian-22 x 3-79, BC1 (2011)AD_ch14_Dt.02N/A52.11NAU3485bView
3JLZM x ZJXSLS, F2 (2008)A_JZ_A02N/A85.3NAU3485View
4AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A62NAU3485View
5AD-genome wide Reference Map (2009)AD_ch02_At.02N/A139NAU3485View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A44.1NAU3485View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A61.7NAU3485View
8TM-1 x Hai-7124, BC1 (2007)AD_ch02_At.02N/A67NAU3485-205View
9TM-1 x Hai-7124, BC1 (2008)AD_ch02_At.02N/A55.69NAU3485-205View
10TM-1 x Hai-7124, BC1 (2012)AD_ch02_At.02N/A51.6NAU3485-205View
11TM-1 x Hai-7124, BC1 (2007)AD_ch14_Dt.02N/A70.3NAU3485-195View
12TM-1 x Hai-7124, BC1 (2008)AD_ch14_Dt.02N/A70.37NAU3485-195View
13TM-1 x Hai-7124, BC1 (2012)AD_ch14_Dt.02N/A42.5NAU3485-195View
14CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A79.7NAU3485View
15PD 94042 x (AD)4-08, F2 (2016)AD_ch02_At.02N/A13.1NAU3485bView
16PD 94042 x (AD)4-08, F2 (2016)AD_ch02_At.02N/A14.2NAU3485aView
Sequence
>NAU3485 ID=NAU3485; Name=NAU3485; organism=Gossypium raimondii; type=genetic_marker; length=202bp
GTTCAAAGTCGGGTTATTGGCGGATGAATGAGGCATCTGCAGCTGCTGCT
GCTGTTGTTGTTGTTGTTGTTGCGGTGTCTGCAGGACGCCAAAGTGATGT
GGAGCAGGTTGGTGGGTTGAATATTGAGGAGATAGTCCTCTATTGAAAGG
ATTTCCATTCATAGCAGACACTTGACCAGCTTGTATCCTAAGCCGTTGCA
CT