NAU3482, NAU3482 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3482
Genbank IDCO107937
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(at)9
PCR ConditionAnnealing temperature: 57
Primer 1NAU3482_F: GTGGGTGCAACAAAAATGTA
Primer 2NAU3482_R: TTCTTCAAGCTCCCATGAAT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO107937
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:68954338..68954558 -
D08chromosomeD08:68959859..68960040 -
A08chromosomeA08:122776536..122776757 -
CM018209.1chromosomeCM018209.1:118091712..118091929 -
D5_08chromosomeD5_08:60831319..60831537 -
D5_08chromosomeD5_08:60825772..60825992 -
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:128402638..128402863 -
D10_08chromosomeD10_08:563405..563625 +
D10_08chromosomeD10_08:559601..559781 +
CM016621.1chromosomeCM016621.1:1163977..1164199 +
scaffold755.1supercontigscaffold755.1:148322..148543 -
D08chromosomeD08:64958805..64959025 -
D08chromosomeD08:64964086..64964267 -
A08chromosomeA08:102650207..102650428 -
A08chromosomeA08:102649317..102649538 -
Ghir_A08chromosomeGhir_A08:121658599..121658820 -
D08chromosomeD08:68106160..68106380 -
D08chromosomeD08:68111801..68111982 -
A08chromosomeA08:124129688..124129909 -
D08chromosomeD08:67710299..67710519 -
D08chromosomeD08:67715818..67715999 -
A08chromosomeA08:124577842..124578063 -
D08chromosomeD08:65010264..65010484 -
D08chromosomeD08:65015785..65015966 -
A08chromosomeA08:120241640..120241861 -
At08chromosomeAt08:107500989..107501206 -
scaffold8264supercontigscaffold8264:158343..158560 +
scaffold9174supercontigscaffold9174:41338..41555 -
Gbar_A08chromosomeGbar_A08:118823126..118823343 -
A08chromosomeA08:119734362..119734579 -
CM017617.1chromosomeCM017617.1:118281600..118281819 -
CM017643.1chromosomeCM017643.1:128157926..128158147 -
D08chromosomeD08:68427537..68427757 -
D08chromosomeD08:68433058..68433239 -
A08chromosomeA08:126490931..126491152 -
Chr08chromosomeChr08:61735656..61735873 -
Chr08chromosomeChr08:61730113..61730333 -
B_08chromosomeB_08:103529565..103529786 -
Chr04chromosomeChr04:63482852..63483072 -
Chr04chromosomeChr04:63488364..63488576 -
Chr04chromosomeChr04:65677972..65678194 -
Chr04chromosomeChr04:65672467..65672688 -
Chr04chromosomeChr04:42418098..42418310 -
E08chromosomeE08:121477575..121477795 -
E08chromosomeE08:121473652..121473872 -
E08chromosomeE08:121466106..121466326 -
Chr04chromosomeNAU3482:1..830 .
Chr04:61299204..61300033 -
Chr04chromosomeNAU3482:1..830 .
Chr04:61293646..61294477 -
Chr4chromosomeNAU3482:1..830 .
Chr4:903676..904505 -
Chr4chromosomeNAU3482:1..830 .
Chr4:898424..899255 -
Image
File NameLegend
45_FISH_GEN-178-1117_fig2.jpgBAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117]
46_FISH_GEN-178-1117_fig3.jpgTwo BAC translocations involving two chromosome pairs of At2 and A3 and At4 and A5 between G. arboreum and A-subgenome of G. hirsutum. [Image from Wang et al., 2008, GEN-178-1117]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch08_At.08N/A0NAU3482View
2JLZM x ZJXSLS, F2 (2008)A_JZ_A08N/A166NAU3482View
3AD-genome wide Reference Map (2009)AD_ch08_At.08N/A15NAU3482View
4TM-1 x Hai-7124, BC1 (2007)AD_ch08_At.08N/A123NAU3482-225View
5TM-1 x Hai-7124, BC1 (2008)AD_ch08_At.08N/A5.89NAU3482-225View
6TM-1 x Hai-7124, BC1 (2012)AD_ch08_At.08N/A124.4NAU3482-225View
Sequence
>NAU3482 ID=NAU3482; Name=NAU3482; organism=Gossypium raimondii; type=genetic_marker; length=219bp
GTGGGTGCAACAAAAATGTAAATAGAATACTTCATATATATATATATATA
TAAATAAAATAATTGTATATAGTGTCTTCGACGATTCAATGCTTCCAGTG
AAATATTTATGGCAAAATTTGTATCCATATCGATCGAAGGCAAGGCACCC
CATTGTAGTTTACGAAGAGCATGTAATAACCAGGTTGCGCAATGTTGCCA
TTCATGGGAGCTTGAAGAA