|
|
Marker Overview
| Name | NAU3468 |
|---|
| Genbank ID | CO107483 |
|---|
| Type | SSR |
|---|
| Species | Gossypium raimondii |
|---|
| Source Type | EST |
|---|
| Repeat Motif | (tgc)8 |
|---|
| PCR Condition | Annealing temperature: 57 |
|---|
| Primer 1 | NAU3468_F: ATAGCACGATTGGGAAGAAC |
|---|
| Primer 2 | NAU3468_R: AGGAAATGAGTCCTCAGCAG |
|---|
| Restriction Enzyme | NotI; EcoRV |
|---|
| Publication | [view all] |
|---|
| Contact | Zhang, Tian-Zhen
|
|---|
| Comment | Primer data obtained in 2007-05 |
|---|
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
|---|
| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch13_At.13 | N/A | 83.06 | NAU3468 | View |
| 2 | AD-genome wide Reference Map (2009) | AD_ch13_At.13 | N/A | 63 | NAU3468 | View |
| 3 | Yumian-1 x T586, RIL (2006) | AD_ch13_At.13 | N/A | 0 | NAU3468 | View |
| 4 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch13_At.13 | N/A | 49.6 | NAU3468 | View |
| 5 | Yumian-1 x T586, RIL (2015) | AD_ch13_At.13 | N/A | 120.1 | NAU3468 | View |
| 6 | Yumian-1 x 7235, RIL (2015) | AD_ch13_At.13 | N/A | 1.3 | NAU3468 | View |
| 7 | DH962 X Ji Mian 5, F2 (2015) | AD_ch13_At.13 | N/A | 62.16 | NAU3468 | View |
| 8 | GX1135 x GX100-2, F2 (2013) | AD_ch13_At.13 | N/A | 77.7 | NAU3468 | View |
| 9 | GX1135 x GX100-2, RIL (2016) | AD_ch13_At.13 | N/A | 25.7 | NAU3468 | View |
| 10 | Emian-22 x 3-79, BC1 (2015) | AD_ch13_At.13 | N/A | 120.3 | NAU3468 | View |
| 11 | DH962 x Ji Mian 5, RIL (2015) | AD_ch13_At.13 | N/A | 43.8 | NAU3468 | View |
| 12 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch13_At.13 | N/A | 67.6 | NAU3468 | View |
| 13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch13_At.13 | N/A | 46.9 | NAU3468-300 | View |
| 14 | TM-1 x Hai-7124, BC1 (2008) | AD_ch13_At.13 | N/A | 47.46 | NAU3468-300 | View |
| 15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch13_At.13 | N/A | 90.8 | NAU3468-300 | View |
| 16 | Yumian-1 x T586, RIL (2009) | AD_ch13_At.13 | N/A | 0 | NAU3468/200y(C13) | View |
| 17 | MGG-293-793, MAGIC (2018) | AD_ch13_At.13 | N/A | 120.3 | NAU3468 | View |
Sequence
>NAU3468 ID=NAU3468; Name=NAU3468; organism=Gossypium raimondii; type=genetic_marker; length=223bp
ATAGCACGATTGGGAAGAACACCAGGAGTAGTACGTAAATGGGCATCAAT
GTTGGAAGGGAAGCGAGAAATTGCCTGCTGCTGTTGCTGATGATGTTGGG
CTTGTTTCTGAAGTTGTTGTAAGAGAAGCATTTGTTGCTGTTGCTGTTGT
TGTTTCTGTTGGTGTAAGAGAAATTGCTGCTGCTGCTGCTGCTGCTGCAG
CCGCTGCTGAGGACTCATTTCCT
|
