NAU3398, NAU3398 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3398
Genbank IDCO104997
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(tgt)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU3398_F: TCCTTCATGTTCTCAAACGA
Primer 2NAU3398_R: CGTCTTCTTCAAGGTTGGAT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO104997
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:55569610..55569770 -
A13chromosomeA13:94525127..94525284 -
CM018227.1chromosomeCM018227.1:51358363..51358517 -
CM018214.1chromosomeCM018214.1:98421361..98421515 -
D5_13chromosomeD5_13:51294650..51294804 +
KI_13chromosomeKI_13:13169761..13169912 +
KI_13chromosomeKI_13:37125201..37125355 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:113251538..113251695 -
D10_13chromosomeD10_13:52439431..52439583 -
CM016626.1chromosomeCM016626.1:145364951..145365105 -
At_chr8chromosomeAt_chr8:76826750..76826910 +
At_chr13chromosomeAt_chr13:20514033..20514190 -
D13chromosomeD13:51431391..51431551 -
A13chromosomeA13:70850781..70851010 -
Ghir_D13chromosomeGhir_D13:54496831..54496991 -
Ghir_A13chromosomeGhir_A13:98274873..98275030 -
D13chromosomeD13:55536056..55536216 -
A13chromosomeA13:100768317..100768474 -
D13chromosomeD13:54662805..54662965 -
A13chromosomeA13:98831498..98831655 -
D13chromosomeD13:51337917..51338077 -
A13chromosomeA13:97210530..97210687 -
At13chromosomeAt13:76825950..76826104 -
scaffold7164supercontigscaffold7164:253060..253214 -
scaffold1393supercontigscaffold1393:427414..427568 -
Gbar_D13chromosomeGbar_D13:51071965..51072119 -
Gbar_A13chromosomeGbar_A13:99368940..99369094 -
D13chromosomeD13:52363620..52363774 -
A13chromosomeA13:102780036..102780190 -
CM017635.1chromosomeCM017635.1:52145592..52145746 -
CM017622.1chromosomeCM017622.1:100369681..100369835 -
CM017648.1chromosomeCM017648.1:105545980..105546137 +
CM017661.1chromosomeCM017661.1:55375963..55376117 -
CM017713.1chromosomeCM017713.1:52029172..52029326 -
CM017700.1chromosomeCM017700.1:100661107..100661261 -
D13chromosomeD13:55722781..55722941 -
A13chromosomeA13:101565027..101565184 -
Chr13chromosomeChr13:106675754..106675911 -
Chr13chromosomeChr13:111217088..111217245 -
Chr13chromosomeChr13:51271674..51271828 +
B_13chromosomeB_13:11721946..11722100 +
Chr13chromosomeChr13:51569000..51569154 +
chr13chromosomechr13:38576140..38576294 +
Chr_13chromosomeChr_13:36910878..36911032 +
Chr13chromosomeChr13:54320737..54320894 -
Chr13chromosomeChr13:35983923..35984077 +
Chr13chromosomeChr13:27990805..27990959 +
Chr13chromosomeChr13:35012636..35012799 +
E13chromosomeE13:103043544..103043698 -
F13chromosomeF13:86597042..86597196 -
Chr13chromosomeChr13:14082856..14083010 +
Chr13chromosomeNAU3398:1..648 .
Chr13:50181413..50182060 +
Chr7chromosomeNAU3398:1..648 .
Chr7:9093301..9093948 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch18_Dt.13N/A100.85NAU3398View
2AD-genome wide Reference Map (2009)AD_ch13_At.13N/A136NAU3398View
3Zhongmiansuo-12 x 8891, RIL (2007)AD_chUN/A45.2NAU3398View
4(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.13N/A86NAU3398View
5GX1135 x VGX100-2, RIL (2016)AD_ch13_At.13N/A32.7NAU3398View
6TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A83.4NAU3398-155View
7TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A26.28NAU3398-155View
8TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A52.4NAU3398-155View
Sequence
>NAU3398 ID=NAU3398; Name=NAU3398; organism=Gossypium raimondii; type=genetic_marker; length=155bp
TCCTTCATGTTCTCAAACGATAGTATCGATTCCAACTGATCATCTCCATG
AGAAATCAAATCACAGTTTGCAGCAGCTGAACAAATCCCAATGCTGTCGC
TGTTGTTGTTGTTGTTAATCTTGGGTGACGATCTCATCCAACCTTGAAGA
AGACG