NAU4017, NAU4017 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU4017
Genbank IDCO128917
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(gaa)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU4017_F: AGTGAAGAAGCACCCAGAAC
Primer 2NAU4017_R: TCGGTATCCTCAAAACACCT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO128917
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:39259715..39259952 +
D11chromosomeD11:27595951..27596182 -
D07chromosomeD07:55405991..55406226 -
D06chromosomeD06:6555497..6555729 -
CM018216.1chromosomeCM018216.1:36771158..36771395 +
CM018225.1chromosomeCM018225.1:26212449..26212680 -
CM018221.1chromosomeCM018221.1:29256812..29256966 -
CM018220.1chromosomeCM018220.1:5817472..5817704 -
D5_10chromosomeD5_10:23407740..23407899 +
D5_10chromosomeD5_10:21971543..21971696 +
D10_02chromosomeD10_02:17774802..17775024 -
At_chr9chromosomeAt_chr9:48271439..48271674 +
Dt_chr8chromosomeDt_chr8:35058774..35058986 -
Dt_chr10chromosomeDt_chr10:24964128..24964360 -
scaffold38966supercontigscaffold38966:510..747 +
D11chromosomeD11:26392047..26392278 -
D07chromosomeD07:52488855..52489090 -
D06chromosomeD06:5569360..5569592 -
Ghir_D02chromosomeGhir_D02:38885960..38886196 +
Ghir_D13chromosomeGhir_D13:13663751..13663867 -
Ghir_D11chromosomeGhir_D11:27020649..27020880 -
Ghir_D07chromosomeGhir_D07:56492024..56492259 -
Ghir_D06chromosomeGhir_D06:6407412..6407644 -
D02chromosomeD02:39648233..39648470 +
D11chromosomeD11:26385404..26385635 -
D07chromosomeD07:55749549..55749784 -
D06chromosomeD06:6170740..6170972 -
D02chromosomeD02:40329951..40330182 +
D11chromosomeD11:27114399..27114630 -
D07chromosomeD07:56119413..56119648 -
D06chromosomeD06:6391504..6391736 -
D02chromosomeD02:37673533..37673770 +
D11chromosomeD11:26849936..26850167 -
D07chromosomeD07:52449502..52449737 -
D06chromosomeD06:5911641..5911873 -
Dt02chromosomeDt02:36408921..36409158 +
scaffold3602supercontigscaffold3602:533866..534103 +
scaffold13682supercontigscaffold13682:121560..121714 +
Gbar_D02chromosomeGbar_D02:37372439..37372676 +
Gbar_D11chromosomeGbar_D11:26521419..26521650 -
Gbar_D07chromosomeGbar_D07:29281471..29281625 -
Gbar_D06chromosomeGbar_D06:5832934..5833166 -
D02chromosomeD02:38640995..38641232 +
D11chromosomeD11:26381750..26381981 -
D07chromosomeD07:29706388..29706542 -
D06chromosomeD06:5800366..5800598 -
CM017624.1chromosomeCM017624.1:39492844..39493081 +
CM017633.1chromosomeCM017633.1:26426473..26426704 -
CM017628.1chromosomeCM017628.1:6403452..6403684 -
CM017650.1chromosomeCM017650.1:40494483..40494720 +
CM017659.1chromosomeCM017659.1:26857374..26857609 -
CM017654.1chromosomeCM017654.1:5992457..5992689 -
CM017702.1chromosomeCM017702.1:38217778..38218015 +
CM017711.1chromosomeCM017711.1:26391900..26392131 -
CM017707.1chromosomeCM017707.1:29745843..29745997 -
CM017706.1chromosomeCM017706.1:5944015..5944247 -
D02chromosomeD02:41045017..41045254 +
D11chromosomeD11:27430396..27430627 -
D07chromosomeD07:56712195..56712430 -
D06chromosomeD06:6466613..6466845 -
Chr07chromosomeChr07:9240454..9240614 +
Chr10chromosomeChr10:39046418..39046576 -
Chr10chromosomeChr10:40484202..40484356 -
Chr03chromosomeChr03:33777027..33777271 -
Chr02chromosomeChr02:42837964..42838121 +
Chr05chromosomeChr05:36795319..36795560 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A144nau4017View
2LMY22 x LY343, RIL (2016)chr.16N/A29nau4017View
3TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A78.1NAU4017-160View
4TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A77.38NAU4017-160View
5H16 x T586, F2 (2009)AD_ch16_Dt.07N/A77.2NAU4017-160View
6TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A53.6NAU4017-160View
Sequence
>NAU4017 ID=NAU4017; Name=NAU4017; organism=Gossypium raimondii; type=genetic_marker; length=159bp
AGTGAAGAAGCACCCAGAACTGGCTTCAGCTCTCTATATATAAACAAGAA
GGAAAGAAAGATATAAAAAGAAGAAGAAGAAGAAGAAGAAAGAGGCATGA
AATTTAAGAACTGATTTTAGGGGTTGCTCAGTAAGAATTAGGTGTTTTGA
GGATACCGA