NAU3325, NAU3325 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3325
Genbank IDCO101724
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(at)12
PCR ConditionAnnealing temperature: 57
Primer 1NAU3325_F: AGGCCTTTTTCATGAATGC
Primer 2NAU3325_R: GACAGGCACAAAGTTTGATTT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO101724
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D5_05chromosomeD5_05:15744115..15744334 -
Chr05chromosomeChr05:15813257..15813476 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A118.9NAU3325View
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A138NAU3325View
3Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A65.3NAU3325View
4W10 x TM-1, F2:3 (2015)AD_ch05_At.05N/A76.1NAU3325View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A47.5NAU3325View
6TM-1 x Hai-7124, BC1 (2007)AD_ch05_At.05N/A90.3NAU3325-225View
7TM-1 x Hai-7124, BC1 (2008)AD_ch05_At.05N/A77.13NAU3325-225View
8TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A129.4NAU3325-225View
9CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A111.44NAU3325View
Sequence
>NAU3325 ID=NAU3325; Name=NAU3325; organism=Gossypium raimondii; type=genetic_marker; length=220bp
AGGCCTTTTTCATGAATGCGTGAATTTCAAAAAAAAAAAAACCACCAAAA
TACCATATATATATATATATATATATATTTTTCTAAAACCTATACCCCCT
TAAATTTATTAAATCAAAAACAAAACCTTAAAAACAATTTAACTTTAAAA
AAAAAAAAAAAAACCCAAGTCGGGATTTTGTTAAAATTTCTCTTTGGAAA
AATCAAACTTTGTGCCTGTC