NAU3287, NAU3287 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3287
Genbank IDCO100370
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(attt)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU3287_F: AAAACGCCAAATTTATCCAG
Primer 2NAU3287_R: AGGACATGCCAAATACGAGT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO100370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:67326617..67326859 +
A08chromosomeA08:121099705..121099948 +
CM018222.1chromosomeCM018222.1:63225201..63225438 +
CM018209.1chromosomeCM018209.1:116457819..116458062 +
D5_08chromosomeD5_08:59246010..59246253 +
KI_08chromosomeKI_08:37442855..37443094 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:126727610..126727853 +
D10_08chromosomeD10_08:2140579..2140823 -
Dt_chr5chromosomeDt_chr5:12567137..12567379 +
scaffold246.1supercontigscaffold246.1:1266106..1266349 -
D08chromosomeD08:63735991..63736233 +
A08chromosomeA08:101003836..101004079 +
Ghir_D08chromosomeGhir_D08:66211031..66211273 +
Ghir_A08chromosomeGhir_A08:119990194..119990437 +
D08chromosomeD08:66506155..66506397 +
A08chromosomeA08:122560072..122560315 +
D08chromosomeD08:66057219..66057461 +
A08chromosomeA08:122879094..122879337 +
D08chromosomeD08:63353364..63353606 +
A08chromosomeA08:118572285..118572528 +
At08chromosomeAt08:105784188..105784431 +
scaffold1843supercontigscaffold1843:395795..396038 +
scaffold19977supercontigscaffold19977:4562..4799 -
Gbar_D08chromosomeGbar_D08:63358648..63358885 +
Gbar_A08chromosomeGbar_A08:117138864..117139107 +
D08chromosomeD08:65096476..65096713 +
A08chromosomeA08:118089169..118089412 +
CM017630.1chromosomeCM017630.1:64920245..64920487 +
CM017617.1chromosomeCM017617.1:116655089..116655332 +
CM017656.1chromosomeCM017656.1:67059969..67060212 +
CM017643.1chromosomeCM017643.1:126414523..126414766 +
CM017708.1chromosomeCM017708.1:63621227..63621464 +
CM017695.1chromosomeCM017695.1:117380963..117381206 +
D08chromosomeD08:66799516..66799758 +
A08chromosomeA08:124818170..124818413 +
Chr08chromosomeChr08:129295706..129295949 +
Chr08chromosomeChr08:130148791..130149034 +
Chr08chromosomeChr08:60148037..60148280 +
B_08chromosomeB_08:101810280..101810521 +
Chr04chromosomeChr04:61775622..61775867 +
chr04chromosomechr04:46655398..46655641 +
Chr_04chromosomeChr_04:44023909..44024153 +
Chr04chromosomeChr04:63963475..63963717 +
Chr04chromosomeChr04:41018269..41018626 +
Chr04chromosomeChr04:34614253..34614501 +
Chr04chromosomeChr04:42222745..42222987 +
E08chromosomeE08:119857037..119857282 -
F08chromosomeF08:102203058..102203299 +
Chr08chromosomeChr08:3433335..3433579 -
Chr04chromosomeNAU3287:1..848 .
Chr04:59725733..59726580 -
Chr4chromosomeNAU3287:1..848 .
Chr4:1990425..1991272 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A113.23NAU3287View
260182 x Jun Mian 1, F2:3 (2007)AD_ch16_Dt.07N/A60.9NAU3287View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch08_At.08N/A61.4NAU3287View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch08_At.08N/A128.64NAU3287View
Sequence
>NAU3287 ID=NAU3287; Name=NAU3287; organism=Gossypium raimondii; type=genetic_marker; length=244bp
AAAACGCCAAATTTATCCAGAACAACAATTTATTTATTTATTTTTGTTAT
TTTATTATTTTCTAAGGCTACCCCTAACACCAGGACGAGGCTTAGATGGC
TCAGCGACATGAACAGCATGACGATTAATAAGCTTAGATTCTTCAAAAGG
AATTTTGGGATGTTTGGCATCATGATGGATCTGCATCGATTTCACATCGG
GAGCGGTTGTTTTGCAATGAGGACACTCGTATTTGGCATGTCCT