NAU3273, NAU3273 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3273
Genbank IDCO099903
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(tca)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU3273_F: ATTATCGGGAGAGGACATGA
Primer 2NAU3273_R: GAGATTGCAGTGGCTCCTAT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO099903
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D04chromosomeD04:5450960..5451154 +
A05chromosomeA05:94586671..94586862 -
CM018218.1chromosomeCM018218.1:4928789..4928983 +
CM018206.1chromosomeCM018206.1:97000894..97001085 -
D5_04chromosomeD5_04:45337750..45337950 -
KI_06chromosomeKI_06:46350639..46350821 +
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:92503873..92504064 -
D10_04chromosomeD10_04:4771548..4771748 +
At_chr9chromosomeAt_chr9:62579429..62579623 -
At_chr9chromosomeAt_chr9:62577990..62578184 -
At_chr9chromosomeAt_chr9:59996920..59997111 -
D04chromosomeD04:4702619..4702813 +
A05chromosomeA05:86337524..86337715 -
Ghir_D04chromosomeGhir_D04:5364712..5364906 +
Ghir_A05chromosomeGhir_A05:103438158..103438349 -
D04chromosomeD04:5289993..5290187 +
A05chromosomeA05:105047399..105047590 -
D04chromosomeD04:5232128..5232322 +
A05chromosomeA05:103540621..103540812 -
D04chromosomeD04:4973000..4973194 +
A05chromosomeA05:101477764..101477955 -
Dt04chromosomeDt04:4818640..4818834 +
scaffold2596supercontigscaffold2596:153495..153689 +
scaffold2596supercontigscaffold2596:155144..155335 +
scaffold23232supercontigscaffold23232:41990..42184 +
Gbar_D04chromosomeGbar_D04:4919066..4919260 +
Gbar_A05chromosomeGbar_A05:97018204..97018395 -
D04chromosomeD04:4896802..4896996 +
A05chromosomeA05:101969692..101969883 -
CM017626.1chromosomeCM017626.1:5039206..5039400 +
CM017614.1chromosomeCM017614.1:99282660..99282851 -
CM017652.1chromosomeCM017652.1:5187123..5187317 +
CM017640.1chromosomeCM017640.1:107701448..107701639 -
CM017704.1chromosomeCM017704.1:5191377..5191571 +
CM017692.1chromosomeCM017692.1:99891924..99892115 -
D04chromosomeD04:5726450..5726644 +
A05chromosomeA05:105234337..105234528 -
Chr04chromosomeChr04:6249925..6250116 +
Chr04chromosomeChr04:6071044..6071235 +
Chr04chromosomeChr04:45768900..45769100 -
B_02chromosomeB_02:78542626..78542823 -
Chr12chromosomeChr12:5208216..5208410 +
chr12chromosomechr12:4763695..4763895 +
Chr_12chromosomeChr_12:3591842..3592042 +
Chr12chromosomeChr12:4938220..4938414 +
Chr12chromosomeChr12:5086007..5086201 +
Chr12chromosomeChr12:3409781..3409975 +
Chr12chromosomeChr12:4780905..4781099 +
E04chromosomeE04:7699181..7699369 +
F04chromosomeF04:5086577..5086786 +
Chr04chromosomeChr04:7284491..7284688 +
Chr12chromosomeNAU3273:1..878 .
Chr12:4883105..4884137 -
Chr12chromosomeNAU3273:1..878 .
Chr12:21390030..21391062 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch05_At.05N/A23.6NAU3273View
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A294NAU3273View
3Zhongmiansuo-12 x 8891, RIL (2007)AD_ch05_At.05N/A73.7NAU3273View
4Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A103NAU3273View
5TM-1 x Hai-7124, BC1 (2008)AD_ch05_At.05N/A168.44NAU3273-250View
6TM-1 x Hai-7124, BC1 (2007)AD_ch05_At.05N/A180.7NAU3273-250View
7TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A35NAU3273-250View
Sequence
>NAU3273 ID=NAU3273; Name=NAU3273; organism=Gossypium raimondii; type=genetic_marker; length=201bp
ATTATCGGGAGAGGACATGACCTTATCTTCTTTTCCACCTGACTTACTAA
CAGCCAACTTTTCATCTCCATCAGTGTTGCATGCATCACCATCACCATCA
TCACTTCCATCATCATCATCATCATCACCATCACCATCAGCCCCATCATC
ATCTTCATCTTCATCATAAACAATGCCTTTTATAGGAGCCACTGCAATCT
C