NAU3186, NAU3186 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3186
Genbank IDCO096461
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(at)9
PCR ConditionAnnealing temperature: 57
Primer 1NAU3186_F: CGAAGCAAATTTCACTCATATC
Primer 2NAU3186_R: ACCATTTGTGAGGCAAGAAT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO096461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:56860255..56860446 +
D12chromosomeD12:56886133..56886315 +
A12chromosomeA12:95838626..95838809 +
CM018213.1chromosomeCM018213.1:92710018..92710201 +
CM018226.1chromosomeCM018226.1:53675977..53676157 -
D5_12chromosomeD5_12:6200292..6200480 -
D5_12chromosomeD5_12:6217655..6217844 -
KI_12chromosomeKI_12:5064140..5064319 -
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:7034307..7034496 -
D10_12chromosomeD10_12:48547501..48547713 +
CM016625.1chromosomeCM016625.1:8808392..8808589 -
Dt_chr8chromosomeDt_chr8:48631603..48631794 +
Dt_chr8chromosomeDt_chr8:48657478..48657660 +
Dt_chr8chromosomeDt_chr8:49852237..49852420 -
D12chromosomeD12:53365288..53365479 +
D12chromosomeD12:53391307..53391489 +
A12chromosomeA12:81264539..81264722 +
Ghir_D12chromosomeGhir_D12:55785900..55786091 +
Ghir_D12chromosomeGhir_D12:55811758..55811940 +
Ghir_A12chromosomeGhir_A12:100477021..100477202 +
D12chromosomeD12:55102725..55102916 +
D12chromosomeD12:55127913..55128095 +
A12chromosomeA12:100794488..100794671 +
D12chromosomeD12:55873876..55874067 +
D12chromosomeD12:55899691..55899873 +
A12chromosomeA12:98629345..98629528 +
D12chromosomeD12:54053960..54054151 +
D12chromosomeD12:54079831..54080013 +
A12chromosomeA12:95544102..95544283 +
scaffold3048supercontigscaffold3048:515472..515655 -
scaffold1283supercontigscaffold1283:245002..245182 -
Gbar_A12chromosomeGbar_A12:95453673..95453856 +
Gbar_D12chromosomeGbar_D12:52686352..52686532 -
A12chromosomeA12:94692522..94692705 +
D12chromosomeD12:54477220..54477400 -
CM017634.1chromosomeCM017634.1:54199395..54199586 +
CM017634.1chromosomeCM017634.1:54175642..54175833 +
CM017634.1chromosomeCM017634.1:54206633..54206815 +
CM017621.1chromosomeCM017621.1:95850105..95850286 +
CM017660.1chromosomeCM017660.1:57071647..57071831 +
CM017660.1chromosomeCM017660.1:57046171..57046364 +
CM017647.1chromosomeCM017647.1:99495447..99495632 +
CM017699.1chromosomeCM017699.1:95043443..95043628 +
CM017712.1chromosomeCM017712.1:54996056..54996238 -
D12chromosomeD12:56241276..56241467 +
D12chromosomeD12:56267161..56267343 +
A12chromosomeA12:102157089..102157272 +
Chr12chromosomeChr12:103249859..103250046 +
Chr12chromosomeChr12:110238198..110238387 +
Chr12chromosomeChr12:51539514..51539702 +
Chr12chromosomeChr12:51522171..51522370 +
B_12chromosomeB_12:81520278..81520475 +
Chr08chromosomeChr08:51818933..51819115 +
Chr08chromosomeChr08:51806325..51806522 +
chr08chromosomechr08:40081180..40081349 +
Chr_08chromosomeChr_08:38297802..38298653 +
Chr08chromosomeChr08:53453832..53454031 +
Chr08chromosomeChr08:53422707..53422900 +
Chr08chromosomeChr08:29016181..29016361 +
Chr08chromosomeChr08:35641743..35642557 +
E12chromosomeE12:106791269..106791459 +
F12chromosomeF12:85210469..85210660 +
Chr12chromosomeChr12:163980996..163981191 +
Chr08chromosomeNAU3186:1..654 .
Chr08:50951698..50952351 +
Chr8chromosomeNAU3186:1..654 .
Chr8:12957739..12958392 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch12_At.12N/A41.8NAU3186View
2AD-genome wide Reference Map (2009)AD_ch12_At.12N/A76NAU3186View
3Zhongmiansuo-12 x 8891, RIL (2007)AD_ch12_At.12N/A32.6NAU3186View
4Emian-22 x 3-79, BC1 (2011)AD_ch26_Dt.12N/A81.3NAU3186View
5Yumian-1 x T586, RIL (2006)AD_ch12_At.12N/A0NAU3186View
6Yumian-1 x T586, RIL (2015)AD_ch12_At.12N/A82.2NAU3186View
7Yumian-1 x 7235, RIL (2015)AD_ch12_At.12N/A124.6NAU3186View
8GX1135 x VGX100-2, RIL (2016)AD_ch06_At.06N/A167.2NAU3186View
9Yumian-1 x T586, RIL (2009)AD_ch12_At.12N/A0NAU3186/280yView
Sequence
>NAU3186 ID=NAU3186; Name=NAU3186; organism=Gossypium raimondii; type=genetic_marker; length=189bp
CGAAGCAAATTTCACTCATATCATTAAATTGATATATATATATATATATA
CTACAAAAGAGAATAAAAATTACAACTAATCCTTATTTAATTAAGTAACA
AGGCAAGCACAACACTTATACAATCTTCTTTAAACCGGAAGAATACAAGT
AAAATTCAGAATGCACCTCATTCTTGCCTCACAAATGGT