NAU3178, NAU3178 (genetic_marker) Gossypium raimondii

Marker Overview


Name	NAU3178
Genbank ID	CO096267
Type	SSR
Species	Gossypium raimondii
Source Type	EST
Repeat Motif	(atg)9
PCR Condition	Annealing temperature: 57
Primer 1	NAU3178_F: GCCAGAAGACAAACCACTTT
Primer 2	NAU3178_R: GGTGCACAGAATAGGTGAAA
Restriction Enzyme	NotI; EcoRV
Publication	[view all]
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CO096267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D01	chromosome	D01:45390808..45391020 +
CM018215.1	chromosome	CM018215.1:44141146..44141388 +
D5_01	chromosome	D5_01:39095026..39095271 +
D10_01	chromosome	D10_01:18264579..18264827 -
Dt_chr2	chromosome	Dt_chr2:5596213..5596425 +
Dt_chr2	chromosome	Dt_chr2:20064754..20064966 +
D01	chromosome	D01:42404370..42404582 +
Ghir_D01	chromosome	Ghir_D01:44074053..44074265 +
Scaffold2368	supercontig	Scaffold2368:12665..12858 -
D01	chromosome	D01:46006555..46006767 +
D01	chromosome	D01:45457437..45457646 +
D01	chromosome	D01:42911277..42911489 +
scaffold154	supercontig	scaffold154:181958..182151 +
scaffold16431	supercontig	scaffold16431:417552..417794 -
Gbar_D01	chromosome	Gbar_D01:44334949..44335188 +
D01	chromosome	D01:45080404..45080649 +
CM017623.1	chromosome	CM017623.1:45151018..45151233 +
CM017649.1	chromosome	CM017649.1:46338640..46338846 +
CM017701.1	chromosome	CM017701.1:44536777..44537016 +
D01	chromosome	D01:45972187..45972399 +
Chr01	chromosome	Chr01:34617803..34618045 +
Chr02	chromosome	Chr02:42982196..42982447 +
chr02	chromosome	chr02:32790912..32791130 +
Chr_02	chromosome	Chr_02:29849715..29849963 +
Chr02	chromosome	Chr02:32559562..32559795 +
Chr02	chromosome	Chr02:31165865..31166089 +
Chr02	chromosome	NAU3178:1..735 . Chr02:44950406..44951260 -
Chr2	chromosome	NAU3178:1..735 . Chr2:19577944..19578822 +

Publications


Year	Publication
2007	Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Emian-22 x 3-79, BC1 (2011)	AD_ch15_Dt.01	N/A	112.02	NAU3178	View
2	JLZM x ZJXSLS, F2 (2008)	A_JZ_A01	N/A	96.2	NAU3178	View
3	AD-genome wide Reference Map (2009)	AD_ch15_Dt.01	N/A	116	NAU3178	View
4	TM-1 x Hai-7124, BC1 (2007)	AD_ch15_Dt.01	N/A	66.8	NAU3178-250	View
5	TM-1 x Hai-7124, BC1 (2008)	AD_ch15_Dt.01	N/A	64.9	NAU3178-250	View
6	TM-1 x Hai-7124, BC1 (2012)	AD_ch15_Dt.01	N/A	60.1	NAU3178-250	View

Sequence

>NAU3178 ID=NAU3178; Name=NAU3178; organism=Gossypium raimondii; type=genetic_marker; length=249bp
GCCAGAAGACAAACCACTTTTCTGAAATTTGCAGTTGAAATTTAAACTTA
AGATCTCACAGAAGGATGATGATGATGATGATGATGATGATGGTTGTTAT
TGTTATTGTTATTGTTGTTATTGTTGTTATTGTTATTATTGTTATTATTA
TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTACCTGA
ACATGTCGAAGAGAAAAGATACAGACACATTTCACCTATTCTGTGCACC

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NAU3178, NAU3178 (genetic_marker) Gossypium raimondii