NAU3177, NAU3177 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3177
Genbank IDCO096249
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(tgtc)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU3177_F: AGCAAATTGAAAAGCACCTC
Primer 2NAU3177_R: GTCACCCTTTTGCTGTTTTT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO096249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D5_01chromosomeD5_01:2393571..2393746 +
Ghir_D01chromosomeGhir_D01:2551405..2551563 +
scaffold7906supercontigscaffold7906:682056..682214 +
Gbar_D01chromosomeGbar_D01:2591931..2592089 +
Chr01chromosomeChr01:2369315..2369490 +
E01chromosomeE01:3398794..3398961 +
Chr02chromosomeNAU3177:1..543 .
Chr02:2370882..2371423 +
Chr8chromosomeNAU3177:1..543 .
Chr8:61938411..61938952 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A17.8NAU3177View
2W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A98.8NAU3177View
3GX1135 x GX100-2, F2 (2013)AD_ch08_At.08N/A94.3NAU3177View
4GX1135 x GX100-2, RIL (2016)AD_ch01_At.01N/A34.4NAU3177View
Sequence
>NAU3177 ID=NAU3177; Name=NAU3177; organism=Gossypium raimondii; type=genetic_marker; length=176bp
AGCAAATTGAAAAGCACCTCCCACTCCTCACAAAACAAAACAAAAAAAAA
AACAAAACTAAAAAAACAGTCTTGTCTGTCTGTCTGTCAGAATATTTATC
CATGGATTTGGAATCCAGCTTGTAAGTCAAAAAGTGAGGAACGAGCGCGT
GGGCTGAAAAACAGCAAAAGGGTGAC