NAU3145, NAU3145 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3145
Genbank IDCO094710
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(atac)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU3145_F: AAAACAGAGGCCTAATATCTCA
Primer 2NAU3145_R: TGTTGGTTTACCTGTTGTGC
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO094710
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:520939..521149 -
CM018215.1chromosomeCM018215.1:453232..453442 -
D5_01chromosomeD5_01:504505..504711 -
scaffold280.1supercontigscaffold280.1:464874..465084 -
D01chromosomeD01:449959..450169 -
Ghir_D01chromosomeGhir_D01:497640..497850 -
D01chromosomeD01:488006..488216 -
D01chromosomeD01:462748..462958 -
Dt01chromosomeDt01:663637..663847 -
scaffold2843supercontigscaffold2843:145486..145696 -
Gbar_D01chromosomeGbar_D01:495113..495323 -
D01chromosomeD01:481694..481912 -
CM017623.1chromosomeCM017623.1:477783..477993 -
CM017649.1chromosomeCM017649.1:489924..490130 -
CM017701.1chromosomeCM017701.1:493859..494073 -
D01chromosomeD01:454494..454704 -
Chr01chromosomeChr01:483476..483682 -
B_01chromosomeB_01:498578..498806 -
E01chromosomeE01:547179..547407 -
Chr02chromosomeNAU3145:9..707 .
Chr02:487120..487818 -
Chr8chromosomeNAU3145:9..707 .
Chr8:22027279..22027977 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A52.2NAU3145View
Sequence
>NAU3145 ID=NAU3145; Name=NAU3145; organism=Gossypium raimondii; type=genetic_marker; length=207bp
AAAACAGAGGCCTAATATCTCACTTAATACATACATATCTTAAAATCCTC
TTATGTACATGCATGCATGCATAACACATATACATACATTTTACCAAAAA
TACATACATACATACAATCCTATGCATATGTTCTCATATACACTACCTGT
ACACTTCTAGCCAAAGGATTATGATCACAAGCAAGCAGCACAACAGGTAA
ACCAACA