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Marker Overview
| Name | NAU3083 |
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| Genbank ID | CO092122 |
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| Type | SSR |
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| Species | Gossypium raimondii |
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| Source Type | EST |
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| Repeat Motif | (tgaagg)4 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU3083_F: TTTCAGTTGTTTTGCTCGAA |
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| Primer 2 | NAU3083_R: CCTTGGGTTTTTCTTCTTCA |
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| Restriction Enzyme | NotI; EcoRV |
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| Publication | [view all] |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch03_At.03 | N/A | 0 | NAU3083 | View |
| 2 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 4 | NAU3083 | View |
| 3 | T582 x Hai-7124, F2 (2010) | AD_ch03_At.03 | N/A | 121.9 | NAU3083 | View |
| 4 | DH962 x Jinmian-6, F2 (2009) | AD_chU | N/A | 0 | NAU3083 | View |
| 5 | DH962 X Ji Mian 5, F2 (2015) | AD_ch01_At.01 | N/A | 30.17 | NAU3083 | View |
| 6 | DH962 X Ji Mian 5, F2 (2015) | AD_ch15_Dt.01 | N/A | 30.17 | NAU3083 | View |
| 7 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch17_Dt.03 | N/A | 109.3 | NAU3083 | View |
| 8 | (86-1 x G. anomalum) x Su8289, BC2F1 (2015) | ABD_Bh.03 | N/A | 14.8 | NAU3083 | View |
| 9 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch17_Dt.03 | N/A | 108 | NAU3083 | View |
| 10 | SG 747 x Giza 75, BIL (2013) | AD_ch03_At.03 | N/A | 139 | NAU3083 | View |
| 11 | LMY22 x LY343, RIL (2016) | chr.3 | N/A | 19.9 | NAU3083 | View |
| 12 | TM-1 x Hai-7124, BC1 (2008) | AD_ch03_At.03 | N/A | 119.72 | NAU3083-175 | View |
| 13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch03_At.03 | N/A | 121.9 | NAU3083-175 | View |
| 14 | TM-1 x Hai-7124, BC1 (2012) | AD_ch03_At.03 | N/A | 117.4 | NAU3083-175 | View |
| 15 | TM-1 x Hai-7124, BC1 (2007) | AD_ch03_At.03 | N/A | 146.4 | NAU3083-400 | View |
| 16 | TM-1 x Hai-7124, BC1 (2008) | AD_ch03_At.03 | N/A | 145.23 | NAU3083-400 | View |
| 17 | TM-1 x Hai-7124, BC1 (2012) | AD_ch03_At.03 | N/A | 142.7 | NAU3083-400 | View |
Sequence
>NAU3083 ID=NAU3083; Name=NAU3083; organism=Gossypium raimondii; type=genetic_marker; length=179bp
TTTCAGTTGTTTTGCTCGAAGGGGTTTCGTTGTGAGGGCAGAATCTAACC
CTGAAGGTGAAGGTGAAGCTGAAAGAAATGAAAATGGTGTTGAAGAACCC
GAAACGAAAGCTGAAGCTGAAGTTGAAGGTGAAGGTGAAGGTGAAGGAGA
AGATGAGGCTGAAGAAGAAAAACCCAAGG
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