NAU3053, NAU3053 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3053
AliasHAU1129=NAU3053
NAU3053=HAU1129
HAU1129
Genbank IDCO090925
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(at)13
PCR ConditionAnnealing temperature: 57
Primer 1NAU3053_F: TTGGAGGTGTCAGATCCTCT
Primer 2NAU3053_R: AAGATCCATGACCCAGAAAA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO090925
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:3952161..3952342 -
A07chromosomeA07:3836731..3836902 -
CM018221.1chromosomeCM018221.1:3650839..3651022 -
CM018208.1chromosomeCM018208.1:4157379..4157550 -
D5_07chromosomeD5_07:3632140..3632331 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:4194387..4194558 -
D10_07chromosomeD10_07:50169987..50170151 +
CM016620.1chromosomeCM016620.1:110875221..110875387 +
Dt_chr1chromosomeDt_chr1:42224990..42225171 +
D07chromosomeD07:3460341..3460522 -
A07chromosomeA07:3344619..3344790 -
Ghir_D07chromosomeGhir_D07:3934539..3934716 -
Ghir_A07chromosomeGhir_A07:4145998..4146169 -
D07chromosomeD07:3783313..3783494 -
A07chromosomeA07:3882411..3882582 -
D07chromosomeD07:3894693..3894874 -
A07chromosomeA07:4132057..4132228 -
D07chromosomeD07:3720771..3720952 -
A07chromosomeA07:4165506..4165677 -
At07chromosomeAt07:3153932..3154103 -
At07chromosomeAt07:3152903..3153074 -
scaffold2826supercontigscaffold2826:81495..81666 -
scaffold2826supercontigscaffold2826:80466..80637 -
Gbar_D07chromosomeGbar_D07:3885719..3885902 -
Gbar_A07chromosomeGbar_A07:4144481..4144652 -
D07chromosomeD07:3842036..3842219 -
A07chromosomeA07:4035471..4035642 -
CM017629.1chromosomeCM017629.1:4074281..4074456 -
CM017616.1chromosomeCM017616.1:3976917..3977088 -
CM017655.1chromosomeCM017655.1:3944955..3945128 -
CM017642.1chromosomeCM017642.1:4145681..4145852 -
CM017707.1chromosomeCM017707.1:3875838..3876021 -
CM017694.1chromosomeCM017694.1:4108924..4109095 -
D07chromosomeD07:3957440..3957621 -
A07chromosomeA07:4162119..4162290 -
Chr07chromosomeChr07:4186734..4186905 -
Chr07chromosomeChr07:4170213..4170384 -
Chr07chromosomeChr07:49901813..49902002 +
Chr01chromosomeChr01:3769096..3769271 -
chr01chromosomechr01:3600961..3601138 -
Chr_01chromosomeChr_01:3850129..3850410 -
Chr01chromosomeChr01:3839911..3840098 -
Chr01chromosomeChr01:2895755..2895938 -
Chr01chromosomeChr01:2745753..2745930 -
Chr01chromosomeChr01:3307843..3308261 -
E07chromosomeE07:89399727..89399912 +
F07chromosomeF07:3735320..3735491 -
Chr07chromosomeChr07:5534770..5534941 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Hai-7124 x Junmian-1, BC1 (2008) partAD_ch07_At.07N/A28.9NAU3053View
2AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A10NAU3053View
3AD-genome wide Reference Map (2009)AD_ch07_At.07N/A189NAU3053View
4Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A102.99NAU3053View
5Yumian-1 x T586, RIL (2006)AD_ch16_Dt.07N/A12.2NAU3053View
6H16 x T586, F2sel (2009)AD_ch16_Dt.07N/A0NAU3053View
760182 x Jun Mian 1, F2:3 (2007)AD_ch16_Dt.07N/A45.3NAU3053View
8Yumian-1 x T586, RIL (2015)AD_ch16_Dt.07N/A12.7NAU3053View
9Prema x 86-1, RIL (2015)AD_ch16_Dt.07N/A0NAU3053View
10TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch16_Dt.07N/A112.1NAU3053View
11SG 747 x Giza 75, BIL (2013)AD_ch16_Dt.07N/A22.8NAU3053View
12TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A30.8NAU3053-190View
13TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A30.68NAU3053-190View
14H16 x T586, F2 (2009)AD_ch16_Dt.07N/A30.7NAU3053-190View
15TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A99.9NAU3053-190View
16Yumian-1 x T586, RIL (2009)AD_ch16_Dt.07N/A45.1NAU3053/180y(C26)View
Sequence
>NAU3053 ID=NAU3053; Name=NAU3053; organism=Gossypium raimondii; type=genetic_marker; length=190bp
TTGGAGGTGTCAGATCCTCTGATTGAAGATTTGACGACCCTTTGGTTCCT
CAAATATTGTGGTATGCATTTGTAGATGGGTTAGAGAAGGAATGAATTGA
CATATATATATATATATATATATATATTATATGCCCCCCCACATTATGAC
AAAATAGCATGTACAGAATGTTTTCTGGGTCATGGATCTT