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Marker Overview
Name | NAU3053 |
Alias | HAU1129=NAU3053 NAU3053=HAU1129 HAU1129
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Genbank ID | CO090925 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (at)13 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU3053_F: TTGGAGGTGTCAGATCCTCT |
Primer 2 | NAU3053_R: AAGATCCATGACCCAGAAAA |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch07_At.07 | N/A | 28.9 | NAU3053 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch16_Dt.07 | N/A | 10 | NAU3053 | View |
3 | AD-genome wide Reference Map (2009) | AD_ch07_At.07 | N/A | 189 | NAU3053 | View |
4 | Emian-22 x 3-79, BC1 (2011) | AD_ch16_Dt.07 | N/A | 102.99 | NAU3053 | View |
5 | Yumian-1 x T586, RIL (2006) | AD_ch16_Dt.07 | N/A | 12.2 | NAU3053 | View |
6 | H16 x T586, F2sel (2009) | AD_ch16_Dt.07 | N/A | 0 | NAU3053 | View |
7 | 60182 x Jun Mian 1, F2:3 (2007) | AD_ch16_Dt.07 | N/A | 45.3 | NAU3053 | View |
8 | Yumian-1 x T586, RIL (2015) | AD_ch16_Dt.07 | N/A | 12.7 | NAU3053 | View |
9 | Prema x 86-1, RIL (2015) | AD_ch16_Dt.07 | N/A | 0 | NAU3053 | View |
10 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch16_Dt.07 | N/A | 112.1 | NAU3053 | View |
11 | SG 747 x Giza 75, BIL (2013) | AD_ch16_Dt.07 | N/A | 22.8 | NAU3053 | View |
12 | TM-1 x Hai-7124, BC1 (2007) | AD_ch16_Dt.07 | N/A | 30.8 | NAU3053-190 | View |
13 | TM-1 x Hai-7124, BC1 (2008) | AD_ch16_Dt.07 | N/A | 30.68 | NAU3053-190 | View |
14 | H16 x T586, F2 (2009) | AD_ch16_Dt.07 | N/A | 30.7 | NAU3053-190 | View |
15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch16_Dt.07 | N/A | 99.9 | NAU3053-190 | View |
16 | Yumian-1 x T586, RIL (2009) | AD_ch16_Dt.07 | N/A | 45.1 | NAU3053/180y(C26) | View |
Sequence
>NAU3053 ID=NAU3053; Name=NAU3053; organism=Gossypium raimondii; type=genetic_marker; length=190bp TTGGAGGTGTCAGATCCTCTGATTGAAGATTTGACGACCCTTTGGTTCCT CAAATATTGTGGTATGCATTTGTAGATGGGTTAGAGAAGGAATGAATTGA CATATATATATATATATATATATATATTATATGCCCCCCCACATTATGAC AAAATAGCATGTACAGAATGTTTTCTGGGTCATGGATCTT
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