NAU3018, NAU3018 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3018
Genbank IDCO089598
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(gct)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU3018_F: ACCAAGCAAGAAGAGACCTG
Primer 2NAU3018_R: ACTTTGGAGTCTGCTTCACC
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO089598
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:62192579..62192917 +
A01chromosomeA01:101542869..101543192 +
CM018215.1chromosomeCM018215.1:60643518..60643841 +
CM018202.1chromosomeCM018202.1:110835725..110836048 +
D5_01chromosomeD5_01:54536961..54537289 +
KI_01chromosomeKI_01:36192152..36192490 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:97124704..97125027 +
D10_01chromosomeD10_01:2046299..2046634 -
D10_01chromosomeD10_01:2043478..2043801 -
D10_01chromosomeD10_01:2034314..2034640 -
CM016614.1chromosomeCM016614.1:134727336..134727668 +
scaffold3851.1supercontigscaffold3851.1:25575..25898 +
Dt_chr9chromosomeDt_chr9:51349196..51349534 -
D01chromosomeD01:59322326..59322664 +
A01chromosomeA01:97626908..97627231 +
Ghir_D01chromosomeGhir_D01:61038031..61038369 +
Ghir_A01chromosomeGhir_A01:115299947..115300270 +
D01chromosomeD01:62527220..62527558 +
A01chromosomeA01:115793291..115793614 +
D01chromosomeD01:62469317..62469655 +
A01chromosomeA01:113598733..113599056 +
D01chromosomeD01:59242362..59242700 +
A01chromosomeA01:110396566..110396889 +
scaffold5640supercontigscaffold5640:24528..24851 -
scaffold2165supercontigscaffold2165:54442..54765 -
Gbar_D01chromosomeGbar_D01:60892461..60892784 +
Gbar_A01chromosomeGbar_A01:113315765..113316088 +
D01chromosomeD01:61536819..61537142 +
A01chromosomeA01:113298253..113298576 +
CM017623.1chromosomeCM017623.1:61782529..61782861 +
CM017610.1chromosomeCM017610.1:111826280..111826603 +
CM017649.1chromosomeCM017649.1:63323834..63324162 +
CM017636.1chromosomeCM017636.1:119364121..119364444 +
CM017701.1chromosomeCM017701.1:61296510..61296833 +
CM017688.1chromosomeCM017688.1:109480962..109481285 +
D01chromosomeD01:62937872..62938210 +
A01chromosomeA01:117255323..117255646 +
Chr01chromosomeChr01:120586130..120586453 +
Chr02chromosomeChr02:2315897..2316220 -
Chr01chromosomeChr01:50340522..50340850 +
B_01chromosomeB_01:95829507..95829829 +
Chr02chromosomeChr02:59223872..59224201 +
Chr02chromosomeChr02:60081437..60081775 +
E01chromosomeE01:114172952..114173276 +
E01chromosomeE01:114176879..114177204 +
F01chromosomeF01:96387196..96387522 +
Chr01chromosomeChr01:2640468..2640794 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A13N/A4.5NAU3018-aView
2DH962 X Ji Mian 5, F2 (2015)AD_ch13_At.13N/A0NAU3018View
30-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A66.1NAU3018View
4DH962 x Ji Mian 5, RIL (2015)AD_ch13_At.13N/A1.9NAU3018View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A39.2NAU3018View
60-153 x sGK9708, RIL (2017)AD_ch01_At.01N/A18.03NAU3018View
Sequence
>NAU3018 ID=NAU3018; Name=NAU3018; organism=Gossypium raimondii; type=genetic_marker; length=206bp
ACCAAGCAAGAAGAGACCTGCTGAGTCATCTAAGAAGACCCCTGCTCCCG
AAAAGAAGGCAAAGCTGGTCACTCCCCAAAAGACAGTTCATTCTGGTGCA
GATAGCAAGAAAGCGGGTGGACATACTGCAACCCCTCACCCTTCCAAAAA
GGCTGGGAAAACATCAGCTGCTGCTGCTGCTGCACAGGTGAAGCAGACTC
CAAAGT