NAU2957, NAU2957 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2957
Genbank IDCO086286
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ta)8
PCR ConditionAnnealing temperature: 57
Primer 1NAU2957_F: CCATCGTATTTGTCATGGAA
Primer 2NAU2957_R: CAAATGTATCAGGCAAACACA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO086286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:30307633..30307791 -
A05chromosomeA05:35407453..35407612 -
CM018219.1chromosomeCM018219.1:28789293..28789451 -
CM018206.1chromosomeCM018206.1:34443801..34443950 -
D5_05chromosomeD5_05:27440333..27440496 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:35430110..35430269 -
D10_05chromosomeD10_05:33030078..33030237 +
CM016618.1chromosomeCM016618.1:71206723..71206896 +
Dt_chr9chromosomeDt_chr9:38433282..38433431 +
Dt_chr9chromosomeDt_chr9:35200310..35200468 -
D05chromosomeD05:29532573..29532731 -
A05chromosomeA05:32251029..32251188 -
Ghir_D05chromosomeGhir_D05:29668919..29669077 -
Ghir_A05chromosomeGhir_A05:34370390..34370549 -
D05chromosomeD05:28920153..28920311 -
A05chromosomeA05:34120460..34120619 -
D05chromosomeD05:29495688..29495846 -
A05chromosomeA05:35319625..35319774 -
D05chromosomeD05:29131794..29131952 -
A05chromosomeA05:34383297..34383456 -
scaffold2747supercontigscaffold2747:24818..24967 +
scaffold1066supercontigscaffold1066:37466..37624 +
Gbar_D05chromosomeGbar_D05:29358948..29359106 -
Gbar_A05chromosomeGbar_A05:33274020..33274169 -
D05chromosomeD05:29092324..29092482 -
A05chromosomeA05:34850291..34850440 -
CM017627.1chromosomeCM017627.1:29059130..29059286 -
CM017614.1chromosomeCM017614.1:34424328..34424477 -
CM017653.1chromosomeCM017653.1:29500836..29500997 -
CM017640.1chromosomeCM017640.1:35598777..35598936 -
CM017705.1chromosomeCM017705.1:29155049..29155207 -
CM017692.1chromosomeCM017692.1:34655665..34655813 -
D05chromosomeD05:30173763..30173921 -
A05chromosomeA05:35746699..35746858 -
Chr05chromosomeChr05:36793563..36793726 -
Chr05chromosomeChr05:36475429..36475588 -
Chr05chromosomeChr05:27575742..27575905 -
B_05chromosomeB_05:51026417..51026576 +
Chr09chromosomeChr09:28073951..28074110 -
chr09chromosomechr09:24680057..24680216 -
Chr_09chromosomeChr_09:23660714..23661037 -
Chr09chromosomeChr09:29239306..29239462 -
Chr09chromosomeChr09:22686189..22686348 -
Chr09chromosomeChr09:20068278..20068437 -
Chr09chromosomeChr09:22997517..22997676 -
E05chromosomeE05:39971457..39971616 -
F05chromosomeF05:31219989..31220144 -
Chr05chromosomeChr05:89570002..89570177 -
Chr09chromosomeNAU2957:5..888 .
Chr09:27365935..27366817 -
scaffold337supercontigNAU2957:5..888 .
scaffold337:517436..518318 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prema x 86-1, RIL (2015)AD_ch05_At.05N/A10.8NAU2957View
2W10 x TM-1, F2:3 (2015)AD_ch05_At.05N/A11NAU2957View
3GX1135 x GX100-2, RIL (2015)AD_ch05_At.05N/A0.6NAU2957View
4GX1135 x GX100-2, RIL (2016)AD_ch04_At.04N/A0.6NAU2957View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A160NAU2957View
6TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A99NAU2957-150View
Sequence
>NAU2957 ID=NAU2957; Name=NAU2957; organism=Gossypium raimondii; type=genetic_marker; length=164bp
CCATCGTATTTGTCATGGAACAGAAATCCAGGAGGACATTAAGCAATTCA
AGAAGAACCTGGAACCTCTTATCACCAATGGTTACAGTTGGGTTGATGGG
TTGATGTATTAAAATGGCCTATATATATATATATAATATAGTTTGTGTTT
GCCTGATACATTTG