NAU2931, NAU2931 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2931
Genbank IDCO085347
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(cag)8
PCR ConditionAnnealing temperature: 57
Primer 1NAU2931_F: CCGATTGGGAAACTAAGAAA
Primer 2NAU2931_R: CACCTTGTTGATGATGAGGA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO085347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:7301510..7301698 +
A07chromosomeA07:7708254..7708430 +
CM018221.1chromosomeCM018221.1:6912523..6912699 +
CM018208.1chromosomeCM018208.1:7920636..7920815 +
D5_07chromosomeD5_07:6863379..6863558 +
KI_07chromosomeKI_07:32307438..32307611 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:8035810..8035986 +
D10_07chromosomeD10_07:47000191..47000379 -
CM016620.1chromosomeCM016620.1:105759753..105759923 -
scaffold120.1supercontigscaffold120.1:1226572..1226748 -
Dt_chr1chromosomeDt_chr1:37199839..37200021 -
D07chromosomeD07:6844228..6844416 +
A07chromosomeA07:7037245..7037421 +
Ghir_D07chromosomeGhir_D07:7149495..7149683 +
Ghir_A07chromosomeGhir_A07:8024972..8025148 +
D07chromosomeD07:6853904..6854092 +
A07chromosomeA07:7587077..7587253 +
D07chromosomeD07:7100283..7100471 +
A07chromosomeA07:7990184..7990360 +
D07chromosomeD07:6954233..6954421 +
A07chromosomeA07:8059876..8060052 +
Dt07chromosomeDt07:7621298..7621474 +
Dt07chromosomeDt07:7625764..7625940 +
scaffold9309supercontigscaffold9309:74920..75096 +
scaffold9309supercontigscaffold9309:79386..79562 +
scaffold5151supercontigscaffold5151:178897..179073 -
Scaffold1510supercontigScaffold1510:12901..13077 +
Gbar_A07chromosomeGbar_A07:7878651..7878827 +
D07chromosomeD07:7057057..7057233 +
A07chromosomeA07:7696643..7696816 +
CM017629.1chromosomeCM017629.1:7333397..7333582 +
CM017616.1chromosomeCM017616.1:7698982..7699158 +
CM017655.1chromosomeCM017655.1:7303159..7303347 +
CM017642.1chromosomeCM017642.1:7898435..7898611 +
CM017707.1chromosomeCM017707.1:7175040..7175216 +
CM017694.1chromosomeCM017694.1:7812057..7812233 +
D07chromosomeD07:7232583..7232771 +
A07chromosomeA07:8060596..8060772 +
Chr07chromosomeChr07:8179914..8180090 +
Chr07chromosomeChr07:8036262..8036438 +
Chr07chromosomeChr07:46716028..46716207 -
B_07chromosomeB_07:8143969..8144160 +
Chr01chromosomeChr01:6996681..6996863 +
chr01chromosomechr01:6418589..6418774 +
Chr01_5114457chromosomeChr01_5114457:9115..9294 -
Chr01chromosomeChr01:6971140..6971319 +
Chr01chromosomeChr01:5736523..5736717 +
Chr01chromosomeChr01:4907175..4907366 +
Chr01chromosomeChr01:6117660..6117845 +
F07chromosomeF07:7178688..7178881 +
Chr07chromosomeChr07:12104637..12104803 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A14NAU2931View
2Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A88.68NAU2931View
3H16 x T586, F2sel (2009)AD_ch16_Dt.07N/A19.8NAU2931View
4Yumian-1 x 7235, RIL (2015)AD_ch16_Dt.07N/A108NAU2931View
5DH962 X Ji Mian 5, F2 (2015)AD_ch07_At.07N/A107.54NAU2931View
6DH962 X Ji Mian 5, F2 (2015)AD_ch16_Dt.07N/A107.54NAU2931View
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch16_Dt.07N/A90.3NAU2931View
8DH962 x Ji Mian 5, RIL (2015)AD_ch16_Dt.07N/A0NAU2931View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch16_Dt.07N/A105.2NAU2931View
10CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A76.2NAU2931View
11TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A47.5NAU2931-180View
12TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A47.65NAU2931-180View
13H16 x T586, F2 (2009)AD_ch16_Dt.07N/A47.6NAU2931-180View
14TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A82.9NAU2931-180View
15CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A48.85NAU2931View
16MGG-293-793, MAGIC (2018)AD_ch16_Dt.07N/A28NAU2931View
Sequence
>NAU2931 ID=NAU2931; Name=NAU2931; organism=Gossypium raimondii; type=genetic_marker; length=180bp
CCGATTGGGAAACTAAGAAAGTAAAGAAGAAAAAGAAAACACAGCAACAG
CAGCAGCAGCAGCAGCAGCAGGAGCAAGAAAAGAAGAAGAAGAAGAAAAA
GAAGAAAAGTAGTAAACTTGTTGTTGGCAATGAGAGCAGCAACAGCCATA
AGGTGCATCATCCTCATCATCAACAAGGTG