NAU2914, NAU2914 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2914
Genbank IDCO084798
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(cac)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU2914_F: GAACACCATGATGAAGACCA
Primer 2NAU2914_R: TCCTCTGTCTCATCCCTTTC
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO084798
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018222.1chromosomeCM018222.1:39863342..39863562 -
D5_08chromosomeD5_08:36300206..36300425 -
D10_08chromosomeD10_08:24616899..24617116 +
CM016621.1chromosomeCM016621.1:71774646..71774860 -
scaffold1417supercontigscaffold1417:77601..77821 +
scaffold1417supercontigscaffold1417:70945..71165 +
scaffold1417supercontigscaffold1417:66532..66752 +
Gbar_D08chromosomeGbar_D08:39795629..39795849 -
D08chromosomeD08:41601866..41602086 -
CM017630.1chromosomeCM017630.1:41160030..41160256 -
CM017708.1chromosomeCM017708.1:40397930..40398150 -
Chr08chromosomeChr08:36951788..36952008 -
chr04chromosomechr04:27918085..27918404 -
Chr04chromosomeChr04:40655094..40655317 -
Chr08chromosomeChr08:111763864..111764078 +
Chr04chromosomeNAU2914:2..857 .
Chr04:36763919..36764774 -
Chr9chromosomeNAU2914:2..857 .
Chr9:7036250..7037105 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch08_At.08N/A103.92NAU2914bView
2Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A32.81NAU2914aView
3AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A83nau2914View
4AD-genome wide Reference Map (2009)AD_ch08_At.08N/A112nau2914View
5Yumian-1 x T586, RIL (2006)AD_ch08_At.08N/A16.1nau2914View
6Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A50.5nau2914View
7DH962 X Ji Mian 5, F2 (2015)AD_ch08_At.08N/A59.18nau2914View
8W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A33nau2914View
90-153 x sGK9708, RIL (2016)AD_ch24_Dt.08N/A54.4nau2914View
10(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.08N/A106.1nau2914View
11DH962 x Ji Mian 5, RIL (2015)AD_ch08_At.08N/A29.9nau2914View
12TM-1 x Hai-7124, BC1 (2007)AD_ch08_At.08N/A58.2NAU2914-125View
13TM-1 x Hai-7124, BC1 (2008)AD_ch08_At.08N/A70.27NAU2914-125View
14TM-1 x Hai-7124, BC1 (2012)AD_ch08_At.08N/A63.2NAU2914-125View
15TM-1 x Hai-7124, BC1 (2007)AD_ch24_Dt.08N/A22.2NAU2914-225View
16TM-1 x Hai-7124, BC1 (2008)AD_ch24_Dt.08N/A88.32NAU2914-225View
17TM-1 x Hai-7124, BC1 (2012)AD_ch24_Dt.08N/A78.6NAU2914-225View
18Yumian-1 x T586, RIL (2009)AD_ch08_At.08N/A10.8NAU2914/140t(C8,C24)View
19PD 94042 x (AD)4-08, F2 (2016)AD_ch08_At.08N/A144.7NAU2914View
20MGG-293-793, MAGIC (2018)AD_ch08_At.08N/A72.3NAU2914bView
Sequence
>NAU2914 ID=NAU2914; Name=NAU2914; organism=Gossypium raimondii; type=genetic_marker; length=221bp
GAACACCATGATGAAGACCATGACCACGAGCACCATGATGAAGACCATGA
CCAGGAGCACCATGATGAAGACCATGACCACGAGCACCATGATGAAGACC
ATGACCACGAACACCATGATGAAGAGGATCATGAGGAAGAGCATCACCAC
CACCACCACCACCACCATCATCACCACCGCCATCATCACCATGGAGAGGA
AGAAAGGGATGAGACAGAGGA