NAU2902, NAU2902 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2902
Genbank IDCO084280
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ag)13
PCR ConditionAnnealing temperature: 57
Primer 1NAU2902_F: GAAAATAAGAGCGGGCTATG
Primer 2NAU2902_R: CATCAACATCTTGTCCCTGA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO084280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:11032123..11032353 +
A12chromosomeA12:14815378..14815588 +
CM018226.1chromosomeCM018226.1:10738092..10738312 +
CM018213.1chromosomeCM018213.1:14166170..14166390 +
D5_12chromosomeD5_12:46798672..46798899 -
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:92329615..92329835 -
CM016625.1chromosomeCM016625.1:33514900..33515116 +
Dt_chr8chromosomeDt_chr8:32820692..32820922 +
At_chr8chromosomeAt_chr8:71495387..71495597 +
D12chromosomeD12:10986427..10986657 +
A12chromosomeA12:14323824..14324034 +
Ghir_D12chromosomeGhir_D12:10972725..10972953 +
Ghir_A12chromosomeGhir_A12:14588651..14588861 +
D12chromosomeD12:10714239..10714469 +
A12chromosomeA12:13921288..13921498 +
D12chromosomeD12:11004330..11004558 +
A12chromosomeA12:14534796..14535006 +
D12chromosomeD12:10920325..10920555 +
A12chromosomeA12:14536095..14536305 +
Dt12chromosomeDt12:11895121..11895341 +
scaffold19434supercontigscaffold19434:196391..196611 +
scaffold6381supercontigscaffold6381:66621..66841 -
Gbar_D12chromosomeGbar_D12:10710296..10710516 +
Gbar_A12chromosomeGbar_A12:14440254..14440474 +
D12chromosomeD12:10638549..10638769 +
A12chromosomeA12:14093250..14093470 +
CM017634.1chromosomeCM017634.1:10781850..10782056 +
CM017621.1chromosomeCM017621.1:14075117..14075337 +
CM017660.1chromosomeCM017660.1:10896693..10896899 +
CM017647.1chromosomeCM017647.1:14668124..14668346 +
CM017712.1chromosomeCM017712.1:10651361..10651581 +
CM017699.1chromosomeCM017699.1:14101574..14101794 +
D12chromosomeD12:11194186..11194416 +
A12chromosomeA12:14630419..14630629 +
Chr12chromosomeChr12:14858951..14859171 +
Chr12chromosomeChr12:14587076..14587296 +
Chr12chromosomeChr12:10602931..10603153 +
B_12chromosomeB_12:15199478..15199695 +
Chr08chromosomeChr08:10842423..10842662 +
chr08chromosomechr08:9973994..9974851 +
Chr_08chromosomeChr_08:9911346..9911689 +
Chr08chromosomeChr08:10969978..10970216 +
Chr08_3447450chromosomeChr08_3447450:7365..7585 +
E12chromosomeE12:16590443..16590663 +
F12chromosomeF12:12726563..12726782 +
Chr12chromosomeChr12:133645672..133645889 -
Chr08chromosomeNAU2902:7..731 .
Chr08:10487023..10487747 -
Chr8chromosomeNAU2902:7..731 .
Chr8:42810725..42811451 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch26_Dt.12N/A0.48NAU2902View
2Yumian-1 x T586, RIL (2006)AD_ch26_Dt.12N/A0NAU2902View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A105.6NAU2902View
4Yumian-1 x T586, RIL (2015)AD_ch26_Dt.12N/A27.4NAU2902View
5Yumian-1 x 7235, RIL (2015)AD_ch26_Dt.12N/A112.9NAU2902View
6DH962 X Ji Mian 5, F2 (2015)AD_ch26_Dt.12N/A95.07NAU2902View
7DH962 x Ji Mian 5, RIL (2015)AD_ch26_Dt.12N/A74.8NAU2902View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A55NAU2902View
9CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A109.8NAU2902View
10Yumian-1 x T586, RIL (2009)AD_ch26_Dt.12N/A50.4NAU2902/200tView
11CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A49.35NAU2902View
12TM-1 x Hai-7124, BC1 (2012)AD_ch26_Dt.12N/A20NAU2902-225View
Sequence
>NAU2902 ID=NAU2902; Name=NAU2902; organism=Gossypium raimondii; type=genetic_marker; length=221bp
GAAAATAAGAGCGGGCTATGGGGTTACAATAAGAAAGAGAGAGAGAGAGA
GAGAGAGAGAGTTCATGAAAAAACGTAGAACCAGTAAAGGAAAACAACAG
AGAAAGATTGAACAAGATGGGTCCTGCGCCTCAGAGTAGAGTTTATCATA
AACCCAGAAAGGAGGATTTCACTGAGTACGGGAGACATGAGTCCTCAAAC
ATCAGGGACAAGATGTTGATG