NAU2901, NAU2901 (genetic_marker) Gossypium raimondii

Marker Overview


Name	NAU2901
Genbank ID	CO084262
Type	SSR
Species	Gossypium raimondii
Source Type	EST
Repeat Motif	(ata)5
PCR Condition	Annealing temperature: 57
Primer 1	NAU2901_F: TCAACACACCTAACCCAAGA
Primer 2	NAU2901_R: GTAGCTTCGGTGGTACGTTT
Restriction Enzyme	NotI; EcoRV
Publication	[view all]
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CO084262

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D01	chromosome	D01:61064025..61064257 -
CM018215.1	chromosome	CM018215.1:59591669..59591898 -
D5_01	chromosome	D5_01:53482686..53482916 -
D10_01	chromosome	D10_01:3115638..3115867 +
CM016614.1	chromosome	CM016614.1:133005061..133005297 -
scaffold238.1	supercontig	scaffold238.1:383949..384181 -
D01	chromosome	D01:58274243..58274475 -
Ghir_D01	chromosome	Ghir_D01:59941266..59941498 -
D01	chromosome	D01:61488800..61489032 -
D01	chromosome	D01:61354596..61354828 -
scaffold196	supercontig	scaffold196:880531..880760 +
Gbar_D01	chromosome	Gbar_D01:59840915..59841144 -
D01	chromosome	D01:60495823..60496052 -
CM017623.1	chromosome	CM017623.1:60722894..60723123 -
CM017649.1	chromosome	CM017649.1:62234827..62235056 -
CM017701.1	chromosome	CM017701.1:60186003..60186232 -
D01	chromosome	D01:61843804..61844036 -
Chr01	chromosome	Chr01:49287176..49287406 -
B_01	chromosome	B_01:94419109..94419345 -
Chr02	chromosome	Chr02:58045607..58045840 -
Chr_02	chromosome	Chr_02:39553863..39554092 -
Chr02	chromosome	Chr02:58875650..58875883 -
Chr02	chromosome	Chr02:42958046..42958275 -
Chr02	chromosome	Chr02:33938132..33938364 -
Chr02	chromosome	Chr02:41427283..41427517 -
Chr01	chromosome	Chr01:4944053..4944279 +
Chr02	chromosome	NAU2901:14..844 . Chr02:59645114..59645944 -
Chr2	chromosome	NAU2901:14..844 . Chr2:2066592..2067422 -

Publications


Year	Publication
2007	Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Emian-22 x 3-79, BC1 (2011)	AD_ch14_Dt.02	N/A	26.34	NAU2901a	View
2	Emian-22 x 3-79, BC1 (2011)	AD_ch15_Dt.01	N/A	143.32	NAU2901b	View
3	AD-genome wide Reference Map (2009)	AD_ch15_Dt.01	N/A	33	nau2901	View
4	(86-1 x G. anomalum) x Su8289, BC2F1 (2015)	ABD_Bh.01	N/A	38.2	nau2901	View
5	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch15_Dt.01	N/A	47.9	nau2901	View
6	CCRI-35 x Yumian-1, RIL (2015)	AD_ch01_At.01	N/A	71.2	nau2901	View
7	TM-1 x Hai-7124, BC1 (2007)	AD_ch15_Dt.01	N/A	101.3	NAU2901-470	View
8	TM-1 x Hai-7124, BC1 (2008)	AD_ch15_Dt.01	N/A	99.72	NAU2901-470	View
9	TM-1 x Hai-7124, BC1 (2012)	AD_ch15_Dt.01	N/A	23.4	NAU2901-470	View
10	CCRI-35 x Yumian-1, RIL (2017)	AD_ch01_At.01	N/A	69.06	NAU2901	View

Sequence

>NAU2901 ID=NAU2901; Name=NAU2901; organism=Gossypium raimondii; type=genetic_marker; length=231bp
TCAACACACCTAACCCAAGAACACAAAAATACTCAAATACATAATAATAA
TAATAAAACAGGGTCCATCGCCAAAAATCAACATATATTCACATACCTAT
AGCAAAAACAAGAACAAAATGTATACATCCCTGAATGAAGATAGAATCAC
AGCCTGGACCAAAGCATGAATCAGATTCATACTAGAAATCCAAATCACAT
CTAGTGGTTTTAAACGTACCACCGAAGCTAC

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NAU2901, NAU2901 (genetic_marker) Gossypium raimondii