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Marker Overview
Name | NAU2862 |
Genbank ID | CO082765 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (ctt)5 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU2862_F: CAACAGCATCAGCTGAAAAC |
Primer 2 | NAU2862_R: AAGAAAACACAGCAACAGCA |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch07_At.07 | N/A | 68.3 | NAU2862 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch16_Dt.07 | N/A | 15 | NAU2862 | View |
3 | AD-genome wide Reference Map (2009) | AD_ch07_At.07 | N/A | 163 | NAU2862 | View |
4 | H16 x T586, F2sel (2009) | AD_ch16_Dt.07 | N/A | 20.2 | NAU2862 | View |
5 | Prema x 86-1, RIL (2015) | AD_ch16_Dt.07 | N/A | 0.57 | NAU2862 | View |
6 | Yumian-1 x 7235, RIL (2015) | AD_ch16_Dt.07 | N/A | 50 | NAU2862 | View |
7 | DH962 X Ji Mian 5, F2 (2015) | AD_ch07_At.07 | N/A | 106.75 | NAU2862 | View |
8 | DH962 X Ji Mian 5, F2 (2015) | AD_ch16_Dt.07 | N/A | 106.75 | NAU2862 | View |
9 | DH962 x Ji Mian 5, RIL (2015) | AD_ch16_Dt.07 | N/A | 7 | NAU2862 | View |
10 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch16_Dt.07 | N/A | 76 | NAU2862 | View |
11 | LMY22 x LY343, RIL (2016) | chr.16 | N/A | 138.4 | NAU2862 | View |
12 | LMY22 x LY343, RIL (2020) | A07 | N/A | 133.17 | NAU2862 | View |
13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch07_At.07 | N/A | 38.4 | NAU2862-275 | View |
14 | TM-1 x Hai-7124, BC1 (2008) | AD_ch07_At.07 | N/A | 39.61 | NAU2862-275 | View |
15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch07_At.07 | N/A | 83.5 | NAU2862-275 | View |
16 | TM-1 x Hai-7124, BC1 (2007) | AD_ch16_Dt.07 | N/A | 47.6 | NAU2862-330 | View |
17 | TM-1 x Hai-7124, BC1 (2008) | AD_ch16_Dt.07 | N/A | 47.73 | NAU2862-330 | View |
18 | H16 x T586, F2 (2009) | AD_ch16_Dt.07 | N/A | 47.7 | NAU2862-330 | View |
19 | TM-1 x Hai-7124, BC1 (2012) | AD_ch16_Dt.07 | N/A | 82.9 | NAU2862-330 | View |
20 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch16_Dt.07 | N/A | 39.2 | NAU2862a | View |
21 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch16_Dt.07 | N/A | 43.4 | NAU2862b | View |
22 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch16_Dt.07 | N/A | 48.85 | NAU2862 | View |
23 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch16_Dt.07 | N/A | 48.9 | NAU2862 | View |
Sequence
>NAU2862 ID=NAU2862; Name=NAU2862; organism=Gossypium raimondii; type=genetic_marker; length=244bp CAACAGCATCAGCTGAAAACCCAATTCCAGGTCCACACCAAACATCTTGA ATCACTCCACAACTAATGTTATAACCACTCCCTTCATTCAAAAGCACACC TTGTTGATGATGAGGATGATGCACCTTATGGCTGTTGCTGCTCTCATTGC CAACAACAAGTTTACTACTTTTCTTCTTTTTCTTCTTCTTCTTCTTTTCT TGCTCCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGTGTTTTCTT
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