NAU2862, NAU2862 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2862
Genbank IDCO082765
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ctt)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU2862_F: CAACAGCATCAGCTGAAAAC
Primer 2NAU2862_R: AAGAAAACACAGCAACAGCA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO082765
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:7301542..7301794 -
A07chromosomeA07:7708286..7708526 -
CM018221.1chromosomeCM018221.1:6912555..6912795 -
CM018208.1chromosomeCM018208.1:7920668..7920911 -
D5_07chromosomeD5_07:6863411..6863654 -
KI_07chromosomeKI_07:32307282..32307579 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:8035842..8036082 -
D10_07chromosomeD10_07:47000095..47000347 +
CM016620.1chromosomeCM016620.1:105759657..105759891 +
scaffold120.1supercontigscaffold120.1:1226476..1226716 +
Dt_chr1chromosomeDt_chr1:37199743..37199995 +
D07chromosomeD07:6844260..6844512 -
A07chromosomeA07:7037277..7037517 -
Ghir_D07chromosomeGhir_D07:7149527..7149779 -
Ghir_A07chromosomeGhir_A07:8025004..8025244 -
D07chromosomeD07:6853936..6854188 -
A07chromosomeA07:7587109..7587349 -
D07chromosomeD07:7100315..7100567 -
A07chromosomeA07:7990216..7990456 -
D07chromosomeD07:6954265..6954517 -
A07chromosomeA07:8059908..8060148 -
Dt07chromosomeDt07:7621330..7621570 -
Dt07chromosomeDt07:7625796..7626036 -
scaffold5151supercontigscaffold5151:178801..179041 +
scaffold9309supercontigscaffold9309:74952..75192 -
scaffold9309supercontigscaffold9309:79418..79658 -
Scaffold1510supercontigScaffold1510:12933..13173 -
Gbar_A07chromosomeGbar_A07:7878683..7878923 -
D07chromosomeD07:7057089..7057329 -
A07chromosomeA07:7696675..7696912 -
CM017629.1chromosomeCM017629.1:7333429..7333678 -
CM017616.1chromosomeCM017616.1:7699014..7699254 -
CM017655.1chromosomeCM017655.1:7303191..7303443 -
CM017642.1chromosomeCM017642.1:7898467..7898707 -
CM017707.1chromosomeCM017707.1:7175072..7175312 -
CM017694.1chromosomeCM017694.1:7812089..7812329 -
D07chromosomeD07:7232615..7232867 -
A07chromosomeA07:8060628..8060868 -
Chr07chromosomeChr07:8179946..8180186 -
Chr07chromosomeChr07:8036294..8036534 -
Chr07chromosomeChr07:46715932..46716175 +
B_07chromosomeB_07:8144001..8144256 -
Chr01chromosomeChr01:6996713..6996959 -
chr01chromosomechr01:6418621..6418870 -
Chr01_5114457chromosomeChr01_5114457:9019..9262 +
Chr01chromosomeChr01:6971172..6971415 -
Chr01chromosomeChr01:5736555..5736813 -
Chr01chromosomeChr01:4907207..4907462 -
Chr01chromosomeChr01:6117692..6117941 -
F07chromosomeF07:7178720..7178977 -
Chr07chromosomeChr07:12104669..12104899 -
Chr01chromosomeNAU2862:1..869 .
Chr01:6790341..6791209 +
Chr1chromosomeNAU2862:1..869 .
Chr1:31004431..31005299 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Hai-7124 x Junmian-1, BC1 (2008) partAD_ch07_At.07N/A68.3NAU2862View
2AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A15NAU2862View
3AD-genome wide Reference Map (2009)AD_ch07_At.07N/A163NAU2862View
4H16 x T586, F2sel (2009)AD_ch16_Dt.07N/A20.2NAU2862View
5Prema x 86-1, RIL (2015)AD_ch16_Dt.07N/A0.57NAU2862View
6Yumian-1 x 7235, RIL (2015)AD_ch16_Dt.07N/A50NAU2862View
7DH962 X Ji Mian 5, F2 (2015)AD_ch07_At.07N/A106.75NAU2862View
8DH962 X Ji Mian 5, F2 (2015)AD_ch16_Dt.07N/A106.75NAU2862View
9DH962 x Ji Mian 5, RIL (2015)AD_ch16_Dt.07N/A7NAU2862View
10CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A76NAU2862View
11LMY22 x LY343, RIL (2016)chr.16N/A138.4NAU2862View
12LMY22 x LY343, RIL (2020)A07N/A133.17NAU2862View
13TM-1 x Hai-7124, BC1 (2007)AD_ch07_At.07N/A38.4NAU2862-275View
14TM-1 x Hai-7124, BC1 (2008)AD_ch07_At.07N/A39.61NAU2862-275View
15TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A83.5NAU2862-275View
16TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A47.6NAU2862-330View
17TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A47.73NAU2862-330View
18H16 x T586, F2 (2009)AD_ch16_Dt.07N/A47.7NAU2862-330View
19TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A82.9NAU2862-330View
20(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch16_Dt.07N/A39.2NAU2862aView
21(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch16_Dt.07N/A43.4NAU2862bView
22CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A48.85NAU2862View
23PD 94042 x (AD)4-08, F2 (2016)AD_ch16_Dt.07N/A48.9NAU2862View
Sequence
>NAU2862 ID=NAU2862; Name=NAU2862; organism=Gossypium raimondii; type=genetic_marker; length=244bp
CAACAGCATCAGCTGAAAACCCAATTCCAGGTCCACACCAAACATCTTGA
ATCACTCCACAACTAATGTTATAACCACTCCCTTCATTCAAAAGCACACC
TTGTTGATGATGAGGATGATGCACCTTATGGCTGTTGCTGCTCTCATTGC
CAACAACAAGTTTACTACTTTTCTTCTTTTTCTTCTTCTTCTTCTTTTCT
TGCTCCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGTGTTTTCTT