NAU2859, NAU2859 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2859
Genbank IDCO082687
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(at)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU2859_F: TACATTCACAAGCCCCATCT
Primer 2NAU2859_R: GGAGAGCCTTAGCATGGATA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO082687
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:89681660..89681860 +
D03chromosomeD03:779275..779465 -
CM018203.1chromosomeCM018203.1:99153133..99153331 +
CM018217.1chromosomeCM018217.1:721951..722149 -
D5_02chromosomeD5_02:678160..678362 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:813043..813247 -
CM016615.1chromosomeCM016615.1:759843..760061 -
Dt_chr5chromosomeDt_chr5:17031306..17031496 +
scaffold1588.1supercontigscaffold1588.1:209634..209834 -
A02chromosomeA02:82690519..82690719 +
D03chromosomeD03:745635..745825 -
Ghir_A02chromosomeGhir_A02:107336303..107336503 +
Ghir_D03chromosomeGhir_D03:740210..740408 -
A02chromosomeA02:107539479..107539679 +
D03chromosomeD03:735848..736038 -
A02chromosomeA02:104993333..104993533 +
D03chromosomeD03:737939..738129 -
A02chromosomeA02:103574513..103574713 +
D03chromosomeD03:742429..742619 -
Dt03chromosomeDt03:887476..887674 -
scaffold16048supercontigscaffold16048:354045..354243 -
scaffold15604supercontigscaffold15604:528370..528568 -
Gbar_A02chromosomeGbar_A02:99467989..99468187 +
Gbar_D03chromosomeGbar_D03:714723..714921 -
A02chromosomeA02:101405097..101405295 +
D03chromosomeD03:722282..722480 -
CM017611.1chromosomeCM017611.1:104378368..104378562 +
CM017625.1chromosomeCM017625.1:711309..711507 -
CM017637.1chromosomeCM017637.1:109167034..109167234 +
CM017651.1chromosomeCM017651.1:778667..778869 -
CM017689.1chromosomeCM017689.1:101555169..101555369 +
CM017703.1chromosomeCM017703.1:744319..744515 -
A02chromosomeA02:107480530..107480730 +
D03chromosomeD03:782695..782885 -
Chr02chromosomeChr02:92177146..92177352 +
Chr02chromosomeChr02:101790278..101790486 +
Chr02chromosomeChr02:688549..688751 -
B_04chromosomeB_04:73175934..73176132 +
Chr03chromosomeChr03:694144..694352 -
chr03chromosomechr03:730675..731006 -
Chr03chromosomeChr03:699152..699354 -
Chr03chromosomeChr03:538642..538838 -
Chr03chromosomeChr03:713414..713712 -
E02chromosomeE02:484922..485128 -
F02chromosomeF02:655960..656169 -
Chr03chromosomeNAU2859:1..900 .
Chr03:686792..687779 +
Chr3chromosomeNAU2859:1..900 .
Chr3:25993770..25994757 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch17_Dt.03N/A76.47NAU2859View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch17_Dt.03N/A41.75NAU2859View
3AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A161NAU2859View
4Yumian-1 x T586, RIL (2006)AD_ch02_At.02N/A73.6NAU2859View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch02_At.02N/A23.7NAU2859View
6Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A120.5NAU2859View
7Yumian-1 x 7235, RIL (2015)AD_ch02_At.02N/A94.1NAU2859View
8TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch17_Dt.03N/A99.1NAU2859View
90-153 x sGK9708, RIL (2016)AD_ch02_At.02N/A28.5NAU2859View
10TM-1 x Hai-7124, BC1 (2007)AD_ch17_Dt.03N/A13.6NAU2859-225View
11TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A86.29NAU2859-225View
12TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A12.3NAU2859-225View
13Yumian-1 x T586, RIL (2009)AD_ch02_At.02N/A19.6NAU2859/170tView
Sequence
>NAU2859 ID=NAU2859; Name=NAU2859; organism=Gossypium raimondii; type=genetic_marker; length=203bp
TACATTCACAAGCCCCATCTATATATATATATATGTATATACATATATAT
ATATATATGTTACATTAGGTTCACAACCTTATTGAAAAATACCATAACCA
ATACAAATTTTTTCATCAAAACCAAACAGAACAGAGTGATTCTTGTGTAA
TTTTTATGCAATTTCAAAATGAAATGTCCAACATATCCATGCTAAGGCTC
TCC