NAU2858, NAU2858 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2858
Genbank IDCO082686
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ta)7tg(ta)3ca(ta)7t
PCR ConditionAnnealing temperature: 57
Primer 1NAU2858_F: AGGCCCTATTTCCAATTTTT
Primer 2NAU2858_R: TCCCCAAGAATCACTCTGTT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO082686
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:89681638..89681802 +
D03chromosomeD03:779333..779487 -
CM018203.1chromosomeCM018203.1:99153111..99153273 +
CM018217.1chromosomeCM018217.1:722009..722171 -
D5_02chromosomeD5_02:678218..678384 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:813101..813269 -
D10_02chromosomeD10_02:637096..637276 -
CM016615.1chromosomeCM016615.1:759901..760083 -
Dt_chr5chromosomeDt_chr5:17031284..17031438 +
scaffold1588.1supercontigscaffold1588.1:209692..209856 -
A02chromosomeA02:82690497..82690661 +
D03chromosomeD03:745693..745847 -
Ghir_A02chromosomeGhir_A02:107336281..107336445 +
Ghir_D03chromosomeGhir_D03:740268..740430 -
A02chromosomeA02:107539457..107539621 +
D03chromosomeD03:735906..736060 -
A02chromosomeA02:104993311..104993475 +
D03chromosomeD03:737997..738151 -
A02chromosomeA02:103574491..103574655 +
D03chromosomeD03:742487..742641 -
Dt03chromosomeDt03:887534..887696 -
scaffold16048supercontigscaffold16048:354103..354265 -
scaffold15604supercontigscaffold15604:528428..528590 -
Gbar_A02chromosomeGbar_A02:99467967..99468129 +
Gbar_D03chromosomeGbar_D03:714781..714943 -
A02chromosomeA02:101405075..101405237 +
D03chromosomeD03:722340..722502 -
CM017611.1chromosomeCM017611.1:104378346..104378504 +
CM017625.1chromosomeCM017625.1:711367..711529 -
CM017637.1chromosomeCM017637.1:109167012..109167176 +
CM017651.1chromosomeCM017651.1:778725..778891 -
CM017689.1chromosomeCM017689.1:101555147..101555311 +
CM017703.1chromosomeCM017703.1:744377..744537 -
A02chromosomeA02:107480508..107480672 +
D03chromosomeD03:782753..782907 -
Chr02chromosomeChr02:92177124..92177294 +
Chr02chromosomeChr02:101790256..101790428 +
Chr02chromosomeChr02:688607..688773 -
Chr03chromosomeChr03:694202..694374 -
chr03chromosomechr03:730733..731028 -
Chr03chromosomeChr03:699210..699376 -
Chr03chromosomeChr03:538700..538860 -
Chr03chromosomeChr03:713472..713734 -
E02chromosomeE02:484980..485150 -
F02chromosomeF02:656018..656191 -
Chr03chromosomeNAU2858:1..699 .
Chr03:687093..687791 -
Chr3chromosomeNAU2858:1..699 .
Chr3:25994071..25994769 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A124.56NAU2858View
2AD-genome wide Reference Map (2009)AD_ch02_At.02N/A9NAU2858View
3Yumian-1 x T586, RIL (2006)AD_ch02_At.02N/A78.3NAU2858View
4Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A122.8NAU2858View
5DH962 X Ji Mian 5, F2 (2015)AD_ch02_At.02N/A4.99NAU2858View
6DH962 x Ji Mian 5, RIL (2015)AD_ch02_At.02N/A8.3NAU2858View
7TM-1 x Hai-7124, BC1 (2007)AD_ch02_At.02N/A6.7NAU2858-200View
8TM-1 x Hai-7124, BC1 (2008)AD_ch02_At.02N/A107.44NAU2858-200View
9TM-1 x Hai-7124, BC1 (2012)AD_ch02_At.02N/A103.9NAU2858-200View
10Yumian-1 x T586, RIL (2009)AD_ch02_At.02N/A14.9NAU2858/130t(C2)View
11MGG-293-793, MAGIC (2018)AD_ch02_At.02N/A133.1NAU2858View
Sequence
>NAU2858 ID=NAU2858; Name=NAU2858; organism=Gossypium raimondii; type=genetic_marker; length=171bp
AGGCCCTATTTCCAATTTTTAATACATTCCCAAGCCCCATCTATATATAT
ATATATGTATATACATATATATATATATATGTTACATTAGGTTCACAACC
TTATTGAAAAATACCATAACCAATACAAATTTTTTCATCAAAACCAAACA
GAACAGAGTGATTCTTGGGGA