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Marker Overview
Name | NAU2858 |
Genbank ID | CO082686 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (ta)7tg(ta)3ca(ta)7t |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU2858_F: AGGCCCTATTTCCAATTTTT |
Primer 2 | NAU2858_R: TCCCCAAGAATCACTCTGTT |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch02_At.02 | N/A | 124.56 | NAU2858 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch02_At.02 | N/A | 9 | NAU2858 | View |
3 | Yumian-1 x T586, RIL (2006) | AD_ch02_At.02 | N/A | 78.3 | NAU2858 | View |
4 | Yumian-1 x T586, RIL (2015) | AD_ch02_At.02 | N/A | 122.8 | NAU2858 | View |
5 | DH962 X Ji Mian 5, F2 (2015) | AD_ch02_At.02 | N/A | 4.99 | NAU2858 | View |
6 | DH962 x Ji Mian 5, RIL (2015) | AD_ch02_At.02 | N/A | 8.3 | NAU2858 | View |
7 | TM-1 x Hai-7124, BC1 (2007) | AD_ch02_At.02 | N/A | 6.7 | NAU2858-200 | View |
8 | TM-1 x Hai-7124, BC1 (2008) | AD_ch02_At.02 | N/A | 107.44 | NAU2858-200 | View |
9 | TM-1 x Hai-7124, BC1 (2012) | AD_ch02_At.02 | N/A | 103.9 | NAU2858-200 | View |
10 | Yumian-1 x T586, RIL (2009) | AD_ch02_At.02 | N/A | 14.9 | NAU2858/130t(C2) | View |
11 | MGG-293-793, MAGIC (2018) | AD_ch02_At.02 | N/A | 133.1 | NAU2858 | View |
Sequence
>NAU2858 ID=NAU2858; Name=NAU2858; organism=Gossypium raimondii; type=genetic_marker; length=171bp AGGCCCTATTTCCAATTTTTAATACATTCCCAAGCCCCATCTATATATAT ATATATGTATATACATATATATATATATATGTTACATTAGGTTCACAACC TTATTGAAAAATACCATAACCAATACAAATTTTTTCATCAAAACCAAACA GAACAGAGTGATTCTTGGGGA
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