|
|
Marker Overview
| Name | NAU2836 |
|---|
| Genbank ID | CO081868 |
|---|
| Type | SSR |
|---|
| Species | Gossypium raimondii |
|---|
| Source Type | EST |
|---|
| Repeat Motif | (ttg)5 |
|---|
| PCR Condition | Annealing temperature: 57 |
|---|
| Primer 1 | NAU2836_F: ATTGGAAGGGTATTGAGCTG |
|---|
| Primer 2 | NAU2836_R: TCCTTTCCCACTTCTGTTCT |
|---|
| Restriction Enzyme | NotI; EcoRV |
|---|
| Publication | [view all] |
|---|
| Contact | Zhang, Tian-Zhen
|
|---|
| Comment | Primer data obtained in 2007-05 |
|---|
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
|---|
| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch03_At.03 | N/A | 14.51 | NAU2836 | View |
| 2 | AD-genome wide Reference Map (2009) | AD_ch17_Dt.03 | N/A | 9 | NAU2836 | View |
| 3 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 6 | NAU2836 | View |
| 4 | Yumian-1 x T586, RIL (2006) | AD_ch17_Dt.03 | N/A | 27 | NAU2836 | View |
| 5 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch17_Dt.03 | N/A | 0 | NAU2836 | View |
| 6 | T582 x Hai-7124, F2 (2010) | AD_ch03_At.03 | N/A | 123.7 | NAU2836 | View |
| 7 | Yumian-1 x T586, RIL (2015) | AD_ch17_Dt.03 | N/A | 115.9 | NAU2836 | View |
| 8 | Yumian-1 x 7235, RIL (2015) | AD_ch17_Dt.03 | N/A | 101.6 | NAU2836 | View |
| 9 | 0-153 x sGK9708, RIL (2016) | AD_ch03_At.03 | N/A | 15.7 | NAU2836 | View |
| 10 | TM-1 x Hai-7124, BC1 (2008) | AD_ch03_At.03 | N/A | 121.11 | NAU2836-220 | View |
| 11 | TM-1 x Hai-7124, BC1 (2007) | AD_ch03_At.03 | N/A | 123.7 | NAU2836-220 | View |
| 12 | TM-1 x Hai-7124, BC1 (2012) | AD_ch03_At.03 | N/A | 118.8 | NAU2836-220 | View |
| 13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch17_Dt.03 | N/A | 125.1 | NAU2836-780 | View |
| 14 | TM-1 x Hai-7124, BC1 (2008) | AD_ch17_Dt.03 | N/A | 85.62 | NAU2836-780 | View |
| 15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch17_Dt.03 | N/A | 123.3 | NAU2836-780 | View |
| 16 | Yumian-1 x T586, RIL (2009) | AD_ch03_At.03 | N/A | 27 | NAU2836/205y(C3,C17) | View |
| 17 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch17_Dt.03 | N/A | 0 | NAU2836a | View |
| 18 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch17_Dt.03 | N/A | 0 | NAU2836b | View |
Sequence
>NAU2836 ID=NAU2836; Name=NAU2836; organism=Gossypium raimondii; type=genetic_marker; length=212bp
ATTGGAAGGGTATTGAGCTGCTTGAACAGCCATTAACAAACAGAAAGAAA
AAGAAAAAAAGCTTTAACAAAATTTCACAACTTCGAAGAAGATAAATGAA
AAATCAAAGTGAAGAACAAGGTGGTATAGCATAAACATAAACCCAAATCA
TTTTTAGTATCTGGTTCTTGATATATATATATATATAAGAGTAGAACAGA
AGTGGGAAAGGA
|
