NAU2811, NAU2811 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2811
Genbank IDCO081005
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(aaag)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU2811_F: TGTTGGCACATAACTGTGGT
Primer 2NAU2811_R: AAGACCAGGAGGAAGAATCC
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO081005
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:7120565..7120895 +
A05chromosomeA05:7794002..7794328 +
CM018219.1chromosomeCM018219.1:6615003..6615332 +
CM018206.1chromosomeCM018206.1:7605856..7606183 +
D5_05chromosomeD5_05:6297984..6298317 +
KI_05chromosomeKI_05:5747079..5747388 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:7671423..7671751 +
D10_05chromosomeD10_05:54185435..54185769 -
CM016626.1chromosomeCM016626.1:11171872..11172206 +
At_chr9chromosomeAt_chr9:55665181..55665507 +
D05chromosomeD05:6915522..6915852 +
A05chromosomeA05:7152993..7153319 +
Ghir_D05chromosomeGhir_D05:6951703..6952033 +
Ghir_A05chromosomeGhir_A05:7803287..7803613 +
D05chromosomeD05:6707357..6707687 +
A05chromosomeA05:7616148..7616474 +
A05chromosomeA05:7805329..7805655 +
D05chromosomeD05:6754803..6755133 +
A05chromosomeA05:8186931..8187257 +
At05chromosomeAt05:5605769..5606096 +
scaffold4759supercontigscaffold4759:487761..488088 +
scaffold17640supercontigscaffold17640:40256..40585 +
Gbar_D05chromosomeGbar_D05:6883595..6883924 +
Gbar_A05chromosomeGbar_A05:7305556..7305883 +
D05chromosomeD05:6961103..6961432 +
A05chromosomeA05:7871703..7872030 +
CM017627.1chromosomeCM017627.1:6806475..6806805 +
CM017614.1chromosomeCM017614.1:7729127..7729453 +
CM017653.1chromosomeCM017653.1:7127575..7127911 +
CM017640.1chromosomeCM017640.1:7858116..7858444 +
CM017705.1chromosomeCM017705.1:6808042..6808373 +
CM017692.1chromosomeCM017692.1:7607033..7607360 +
D05chromosomeD05:6929454..6929784 +
A05chromosomeA05:7981150..7981476 +
Chr05chromosomeChr05:8308784..8309111 +
Chr05chromosomeChr05:7549860..7550187 +
Chr05chromosomeChr05:6332648..6332982 +
B_05chromosomeB_05:78494176..78494507 -
Chr09chromosomeChr09:6509301..6509632 +
Chr_09chromosomeChr_09:6219418..6219859 +
Chr09chromosomeChr09:6745471..6745801 +
Chr09chromosomeChr09:6103070..6103536 +
Chr09chromosomeChr09:5058867..5059322 +
Chr09chromosomeChr09:5965575..5965908 +
E05chromosomeE05:8211503..8211833 +
F05chromosomeF05:6671608..6671937 +
Chr09chromosomeNAU2811:1..775 .
Chr09:6285418..6286295 -
Chr9chromosomeNAU2811:1..775 .
Chr9:11198249..11199217 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A71nau2811View
2Baimian 1 x TM-1 , F2:3 (2014)AD_ch05_At.05N/A0nau2811View
3Baimian 1 x TM-1 , F2:3 (2014)AD_ch19_Dt.05N/A0nau2811View
4Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A26.8nau2811View
5TM-1 x Hai-7124, BC1 (2007)AD_ch19_Dt.05N/A38NAU2811-580View
6TM-1 x Hai-7124, BC1 (2008)AD_ch19_Dt.05N/A38.34NAU2811-580View
7TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A151.7NAU2811-580View
Sequence
>NAU2811 ID=NAU2811; Name=NAU2811; organism=Gossypium raimondii; type=genetic_marker; length=232bp
TGTTGGCACATAACTGTGGTGCTTGACATCTATGTTCTTCAGCCATATTT
TTTCAATCTCCTTTCAAACCAGAGACGAGAGTTTCACAGGAAAACGAAAC
CCAAATCTTATTATAATCAGAATGGAAAGAAGAAGAAAAAGTAAACGAGG
AAATAGAAGGGAAGGGAAAGGAATCGCTCTTTCTGGGGGAAAAAAGAAAG
AAAGAAAGGGAAGGATTCTTCCTCCTGGTCTT