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Marker Overview
| Name | NAU2687 |
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| Genbank ID | CO075088 |
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| Type | SSR |
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| Species | Gossypium raimondii |
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| Source Type | EST |
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| Repeat Motif | (ta)6ca(ta)5 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU2687_F: CTGAGACTGTCCATGTCCAA |
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| Primer 2 | NAU2687_R: ATCTGGGTTTTCCCTTTTTC |
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| Restriction Enzyme | NotI; EcoRV |
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| Publication | [view all] |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | AD-genome wide Reference Map (2009) | AD_ch25_Dt.06 | N/A | 83 | nau2687 | View |
| 2 | Yumian-1 x T586, RIL (2006) | AD_ch06_At.06 | N/A | 12.6 | nau2687 | View |
| 3 | Yumian-1 x T586, RIL (2015) | AD_ch06_At.06 | N/A | 68.2 | nau2687 | View |
| 4 | DH962 X Ji Mian 5, F2 (2015) | AD_ch06_At.06 | N/A | 25.18 | nau2687 | View |
| 5 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch25_Dt.06 | N/A | 42 | nau2687 | View |
| 6 | DH962 x Ji Mian 5, RIL (2015) | AD_ch06_At.06 | N/A | 38.4 | nau2687 | View |
| 7 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch25_Dt.06 | N/A | 41.8 | nau2687 | View |
| 8 | TM-1 x Hai-7124, BC1 (2007) | AD_ch25_Dt.06 | N/A | 90.3 | NAU2687-225 | View |
| 9 | TM-1 x Hai-7124, BC1 (2008) | AD_ch25_Dt.06 | N/A | 49.06 | NAU2687-225 | View |
| 10 | TM-1 x Hai-7124, BC1 (2012) | AD_ch25_Dt.06 | N/A | 61.7 | NAU2687-225 | View |
| 11 | Yumian-1 x T586, RIL (2009) | AD_ch06_At.06 | N/A | 17.7 | NAU2687/200y(C25) | View |
Sequence
>NAU2687 ID=NAU2687; Name=NAU2687; organism=Gossypium raimondii; type=genetic_marker; length=216bp
CTGAGACTGTCCATGTCCAAATCCAAGAGAAATAAGTCTTCTTCACAACC
AGAACAGAGAACATATATAGAAATATATATATATACATATATATATAACA
AACTTAAGCCAAAGAAAAAGAATTTCATAATCTGAAATAAGAAAAAATGT
ATAAAAAGAATCATATAATCATTATGCAGAAGCAGAAAATTTAAAAGAAA
AAGGGAAAACCCAGAT
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