NAU2684, NAU2684 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2684
Genbank IDCO075044
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(gtg)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU2684_F: CTCCTATCATTGTCCCGTCT
Primer 2NAU2684_R: CCAAGCTAGGTTTGGGTTTA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO075044
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1323supercontigscaffold_1323:30726..30880 +
D06chromosomeD06:61393706..61393860 +
A06chromosomeA06:114490028..114490173 -
CM018220.1chromosomeCM018220.1:56264944..56265098 -
CM018207.1chromosomeCM018207.1:109453595..109453749 -
D5_06chromosomeD5_06:54574616..54574769 -
KI_06chromosomeKI_06:53840104..53840252 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:123074621..123074775 -
D10_06chromosomeD10_06:6531085..6531242 +
CM016619.1chromosomeCM016619.1:10636102..10636255 +
Dt_chr10chromosomeDt_chr10:1529137..1529291 +
At_chr10chromosomeAt_chr10:32279370..32279530 +
D06chromosomeD06:57746291..57746445 +
A06chromosomeA06:97326101..97326246 -
Scaffold949supercontigScaffold949:13250..13410 +
Ghir_D06chromosomeGhir_D06:59895497..59895651 +
Ghir_A06chromosomeGhir_A06:116885342..116885487 -
D06chromosomeD06:58924381..58924535 +
A06chromosomeA06:119664316..119664461 -
D06chromosomeD06:59160180..59160334 +
A06chromosomeA06:118894235..118894386 -
A06chromosomeA06:118873433..118873578 -
D06chromosomeD06:56386388..56386542 +
A06chromosomeA06:114756874..114757034 -
A06chromosomeA06:114736054..114736214 -
Dt06chromosomeDt06:60252074..60252228 +
At06chromosomeAt06:94334056..94334210 -
scaffold25519supercontigscaffold25519:11491..11645 +
scaffold8967supercontigscaffold8967:272897..273051 -
Gbar_D06chromosomeGbar_D06:56431395..56431549 -
Gbar_A06chromosomeGbar_A06:108483472..108483626 -
D06chromosomeD06:56601715..56601869 -
A06chromosomeA06:111592603..111592757 -
CM017628.1chromosomeCM017628.1:56889121..56889269 +
CM017615.1chromosomeCM017615.1:114549760..114549914 -
CM017654.1chromosomeCM017654.1:59918862..59919016 -
CM017641.1chromosomeCM017641.1:119879676..119879830 -
CM017706.1chromosomeCM017706.1:56955641..56955795 -
CM017693.1chromosomeCM017693.1:112785439..112785593 -
D06chromosomeD06:59919767..59919921 +
A06chromosomeA06:121049717..121049862 -
Chr06chromosomeChr06:120608484..120608638 -
Chr06chromosomeChr06:122220060..122220214 -
Chr06chromosomeChr06:54256312..54256466 -
B_06chromosomeB_06:7923715..7923869 +
Chr10chromosomeChr10:56371383..56371537 -
chr10chromosomechr10:43722768..43722919 -
Chr_10chromosomeChr_10:39239381..39239599 -
Chr10chromosomeChr10:58290834..58290991 -
Chr10chromosomeChr10:37046012..37046166 -
Chr10_6280494chromosomeChr10_6280494:6073..6227 -
E06chromosomeE06:9668711..9668862 +
F06chromosomeF06:92999476..92999630 -
Chr06chromosomeChr06:11058596..11058749 +
Chr10chromosomeNAU2684:1..870 .
Chr10:55989571..55991284 +
Chr10chromosomeNAU2684:1..870 .
Chr10:40934091..40935804 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Zhongmiansuo-12 x 8891, RIL (2007)AD_chUN/A0NAU2684View
2Yumian-1 x T586, RIL (2006)AD_ch06_At.06N/A24.4NAU2684View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch06_At.06N/A41.4NAU2684View
4Yumian-1 x T586, RIL (2015)AD_ch06_At.06N/A108.4NAU2684View
50-153 x sGK9708, RIL (2016)AD_ch06_At.06N/A76.1NAU2684View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch06_At.06N/A59.9NAU2684View
7CCRI-35 x Yumian-1, RIL (2015)AD_ch06_At.06N/A108.5NAU2684View
8CCRI-36 x G2005, RIL (2016)AD_ch06_At.06N/A0NAU2684View
9Yumian-1 x T586, RIL (2009)AD_ch06_At.06N/A21.9NAU2684/160yView
10CCRI-35 x Yumian-1, RIL (2017)AD_ch06_At.06N/A76.63NAU2684View
Sequence
>NAU2684 ID=NAU2684; Name=NAU2684; organism=Gossypium raimondii; type=genetic_marker; length=155bp
CTCCTATCATTGTCCCGTCTAGCCATTCCGGTGCGCTCGCATTGGGGAAC
CAAACAAGGCGGTCGGATGGTGGTTTCGGGGCTGCTTTTTTGGGTTGTGG
TGGTGGTGGTGGTGGTGCTTTCTTGGTGCCAAAACTAAACCCAAACCTAG
CTTGG