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Marker Overview
Name | NAU2684 |
Genbank ID | CO075044 |
Type | SSR |
Species | Gossypium raimondii |
Source Type | EST |
Repeat Motif | (gtg)7 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU2684_F: CTCCTATCATTGTCCCGTCT |
Primer 2 | NAU2684_R: CCAAGCTAGGTTTGGGTTTA |
Restriction Enzyme | NotI; EcoRV |
Publication | [view all] |
Contact | Zhang, Tian-Zhen
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_chU | N/A | 0 | NAU2684 | View |
2 | Yumian-1 x T586, RIL (2006) | AD_ch06_At.06 | N/A | 24.4 | NAU2684 | View |
3 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch06_At.06 | N/A | 41.4 | NAU2684 | View |
4 | Yumian-1 x T586, RIL (2015) | AD_ch06_At.06 | N/A | 108.4 | NAU2684 | View |
5 | 0-153 x sGK9708, RIL (2016) | AD_ch06_At.06 | N/A | 76.1 | NAU2684 | View |
6 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch06_At.06 | N/A | 59.9 | NAU2684 | View |
7 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch06_At.06 | N/A | 108.5 | NAU2684 | View |
8 | CCRI-36 x G2005, RIL (2016) | AD_ch06_At.06 | N/A | 0 | NAU2684 | View |
9 | Yumian-1 x T586, RIL (2009) | AD_ch06_At.06 | N/A | 21.9 | NAU2684/160y | View |
10 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch06_At.06 | N/A | 76.63 | NAU2684 | View |
Sequence
>NAU2684 ID=NAU2684; Name=NAU2684; organism=Gossypium raimondii; type=genetic_marker; length=155bp CTCCTATCATTGTCCCGTCTAGCCATTCCGGTGCGCTCGCATTGGGGAAC CAAACAAGGCGGTCGGATGGTGGTTTCGGGGCTGCTTTTTTGGGTTGTGG TGGTGGTGGTGGTGGTGCTTTCTTGGTGCCAAAACTAAACCCAAACCTAG CTTGG
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