NAU2671, NAU2671 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2671
Genbank IDCO074727
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(tga)10
PCR ConditionAnnealing temperature: 57
Primer 1NAU2671_F: TTGCAACCCTAATGTCAATG
Primer 2NAU2671_R: AAACGATGGGAAAAGTGGTA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO074727
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:59453060..59453285 -
A12chromosomeA12:98983074..98983296 -
CM018226.1chromosomeCM018226.1:55839342..55839564 -
CM018213.1chromosomeCM018213.1:95499129..95499347 -
D5_12chromosomeD5_12:3830525..3830753 +
KI_12chromosomeKI_12:3302442..3302655 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:4090053..4090272 +
D10_12chromosomeD10_12:50833608..50833830 -
CM016625.1chromosomeCM016625.1:5092230..5092449 +
At_chr12chromosomeAt_chr12:51038560..51038782 +
Dt_chr8chromosomeDt_chr8:52823512..52823737 -
scaffold3404_A12supercontigscaffold3404_A12:289906..290128 +
D12chromosomeD12:56000941..56001166 -
Ghir_D12chromosomeGhir_D12:58389391..58389616 -
Ghir_A12chromosomeGhir_A12:103305759..103305981 -
D12chromosomeD12:57620623..57620848 -
A12chromosomeA12:103464786..103465008 -
D12chromosomeD12:58465877..58466102 -
A12chromosomeA12:101462955..101463177 -
D12chromosomeD12:56640473..56640698 -
A12chromosomeA12:98379013..98379235 -
scaffold6368supercontigscaffold6368:12697..12915 +
scaffold12177supercontigscaffold12177:29947..30169 +
Scaffold2535supercontigScaffold2535:57195..57413 -
Gbar_D12chromosomeGbar_D12:54923200..54923422 -
D12chromosomeD12:56760504..56760726 -
A12chromosomeA12:97555948..97556166 -
CM017634.1chromosomeCM017634.1:56643451..56643673 -
CM017621.1chromosomeCM017621.1:98707112..98707331 -
CM017660.1chromosomeCM017660.1:59579297..59579525 -
CM017647.1chromosomeCM017647.1:102498930..102499152 -
CM017712.1chromosomeCM017712.1:57249109..57249331 -
CM017699.1chromosomeCM017699.1:97924889..97925107 -
D12chromosomeD12:58870991..58871216 -
A12chromosomeA12:105024699..105024921 -
Chr12chromosomeChr12:106096817..106097036 -
Chr12chromosomeChr12:113160884..113161103 -
Chr12chromosomeChr12:53906410..53906638 -
B_12chromosomeB_12:87004469..87004694 +
Chr08chromosomeChr08:54289654..54289882 -
chr08chromosomechr08:42160254..42160473 -
Chr_08chromosomeChr_08:40114720..40114939 -
Chr08chromosomeChr08:55866424..55866640 -
Chr08chromosomeChr08:39129717..39129948 -
Chr08chromosomeChr08:30578287..30578515 -
Chr08chromosomeChr08:37497287..37497509 -
E12chromosomeE12:109616522..109616738 -
F12chromosomeF12:87581220..87581445 -
Chr12chromosomeChr12:168571956..168572172 -
Chr08chromosomeNAU2671:1..766 .
Chr08:53292781..53293546 -
Chr8chromosomeNAU2671:1..766 .
Chr8:8029362..8030127 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A162.09NAU2671View
2AD-genome wide Reference Map (2009)AD_ch12_At.12N/A42NAU2671View
3Emian-22 x 3-79, BC1 (2015)AD_ch12_At.12N/A41NAU2671View
40-153 x sGK9708, RIL (2016)AD_ch12_At.12N/A74.3NAU2671View
50-153 x sGK9708, RIL (2017)AD_ch26_Dt.12N/A5.65NAU2671View
6TM-1 x Hai-7124, BC1 (2007)AD_ch12_At.12N/A80.4NAU2671-300View
7TM-1 x Hai-7124, BC1 (2008)AD_ch12_At.12N/A117NAU2671-300View
8TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A116.2NAU2671-300View
9PD 94042 x (AD)4-08, F2 (2016)AD_ch26_Dt.12N/A150.7NAU2671View
Sequence
>NAU2671 ID=NAU2671; Name=NAU2671; organism=Gossypium raimondii; type=genetic_marker; length=229bp
TTGCAACCCTAATGTCAATGACACACCTCCTCCACCGTTGAAGCTTTGAT
TAGCGTTATGATAAGGTACCCCACCACCCGCCGTGTGATCACCGTAGGAA
GCGAAGTCCAGTTCCATGGCAGTGGCACCATAGGTTCCGAAACTTTGTTG
TTGATGATGATGATGATGATGATGATGATGATGCAAGTGCTGGTTTTCAA
GGGTTTTGGTACCACTTTTCCCATCGTTT