NAU2437, NAU2437 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2437
Genbank IDDT052111
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052111.1
Source TypeEST
Repeat MotifATAC(8)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2437_F: CTTGGAAAAAGGAAGAGCAG
Primer 2NAU2437_R: TTAAAAGACCAAAGGCAAGG
Product Length234
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052111
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:64307103..64307344 +
A01chromosomeA01:103865020..103865253 +
CM018215.1chromosomeCM018215.1:62570737..62570990 +
CM018202.1chromosomeCM018202.1:112937710..112937947 +
D5_01chromosomeD5_01:56476045..56476294 +
KI_01chromosomeKI_01:38017864..38018077 +
tig00000254_CRI-A2_v1.0.a1chromosometig00000254_CRI-A2_v1.0.a1:188249..188484 -
CM016614.1chromosomeCM016614.1:137045314..137045547 +
scaffold2318.1supercontigscaffold2318.1:121967..122196 +
At_chr9chromosomeAt_chr9:42338832..42339073 +
scaffold2616.1supercontigscaffold2616.1:166718..166959 -
D01chromosomeD01:61423875..61424116 +
A01chromosomeA01:99877687..99877920 +
Ghir_D01chromosomeGhir_D01:63117219..63117460 +
Ghir_A01chromosomeGhir_A01:117611146..117611379 +
D01chromosomeD01:64532285..64532526 +
A01chromosomeA01:117977729..117977962 +
D01chromosomeD01:64528839..64529066 +
A01chromosomeA01:115897390..115897630 +
D01chromosomeD01:60994139..60994368 +
A01chromosomeA01:112484263..112484496 +
Dt01chromosomeDt01:62967857..62968082 +
scaffold18544supercontigscaffold18544:89272..89497 +
scaffold908supercontigscaffold908:69105..69662 -
Gbar_A01chromosomeGbar_A01:115462846..115463083 +
D01chromosomeD01:63455551..63455820 +
A01chromosomeA01:115444030..115444267 +
CM017623.1chromosomeCM017623.1:63833998..63834244 +
CM017610.1chromosomeCM017610.1:113982944..113983193 +
CM017649.1chromosomeCM017649.1:65541010..65541247 +
CM017636.1chromosomeCM017636.1:121635155..121635396 +
CM017701.1chromosomeCM017701.1:63319590..63319827 +
D01chromosomeD01:65043273..65043514 +
A01chromosomeA01:119567711..119567944 +
A01chromosomeA01:119551841..119552074 +
Chr01chromosomeChr01:122662490..122662718 +
Chr02chromosomeChr02:197614..197849 -
Chr01chromosomeChr01:52254236..52254485 +
B_01chromosomeB_01:97946442..97946667 +
Chr02chromosomeChr02:61227667..61227884 +
chr02chromosomechr02:47426581..47426806 +
Chr_02chromosomeChr_02:41846148..41846373 +
Chr02chromosomeChr02:62158553..62158806 +
Chr02chromosomeChr02:45813469..45813696 +
Chr02chromosomeChr02:36107471..36107692 +
Chr02chromosomeChr02:44155207..44155866 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052111.1DT052111.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A10NAU2437View
2Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A160.41NAU2437View
3Yumian-1 x T586, RIL (2006)AD_ch15_Dt.01N/A21.5NAU2437View
4Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A115.8NAU2437View
5DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A0NAU2437View
6W10 x TM-1, F2:3 (2015)AD_ch01_At.01N/A8.2NAU2437View
7GX1135 x GX100-2, RIL (2016)AD_ch01_At.01N/A196.9NAU2437View
80-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A108.9NAU2437View
9DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A14.7NAU2437View
10CCRI-36 x G2005, RIL (2016)AD_ch01_At.01N/A132.33NAU2437View
11TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A144.38NAU2437aView
12TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A0NAU2437aView
13CCRI-35 x Yumian-1, RIL (2015)AD_ch15_Dt.01N/A124.3NAU2437aView
14TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A0NAU2437aView
15TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A118NAU2437bView
16TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A0NAU2437bView
17GX1135 x GX100-2, F2 (2013)AD_ch01_At.01N/A189.9NAU2437bView
18CCRI-35 x Yumian-1, RIL (2015)AD_ch01_At.01N/A26.4NAU2437bView
19TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A0NAU2437bView
20TM-1 x Hai-7124, BC1 (2007)AD_ch15_Dt.01N/A118.5NAU2437-270View
21TM-1 x Hai-7124, BC1 (2008)AD_ch15_Dt.01N/A116.63NAU2437-270View
22TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A8.3NAU2437-270View
23Yumian-1 x T586, RIL (2009)AD_ch15_Dt.01N/A0NAU2437/220t(C15)View
24CCRI-35 x Yumian-1, RIL (2017)AD_ch01_At.01N/A100.43NAU2437View
25CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A115.99NAU2437View
26MGG-293-793, MAGIC (2018)AD_ch15_Dt.01N/A178.6NAU2437View
27TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A13.3NAU2437-235View
Sequence
>NAU2437 ID=NAU2437; Name=NAU2437; organism=Gossypium hirsutum; type=genetic_marker; length=234bp
CTTGGAAAAAGGAAGAGCAGAATTTTATACACCAACAGAATGAGAATGTT
GAGAAAGAAAAAAAGAATAAACCACTGACCACAAGACAATACATACATAC
ATACATACATACATACATACACACGTATATATATATTTGCTATTCACTAA
GATGGAGAATTTAACATATTGAATGAAATGAAAATTTTCAACAAGCATAT
CCAAAAGGATGTGTCCTTGCCTTTGGTCTTTTAA