NAU2432, NAU2432 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2432
Genbank IDDT051953
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT051953.1
Source TypeEST
Repeat MotifAGA(8)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2432_F: AACTACAAAAGGATGAACATGG
Primer 2NAU2432_R: TAGGGTTATTGCAGGCTAGG
Product Length158
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT051953
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:17583947..17584104 -
A07chromosomeA07:21986532..21986684 -
CM018221.1chromosomeCM018221.1:16916513..16916679 -
CM018208.1chromosomeCM018208.1:21973220..21973369 -
D5_07chromosomeD5_07:16010480..16010637 -
KI_07chromosomeKI_07:27706006..27706167 +
tig00017252_CRI-A2_v1.0.a1chromosometig00017252_CRI-A2_v1.0.a1:815821..815974 +
D10_07chromosomeD10_07:37680897..37681045 +
CM016620.1chromosomeCM016620.1:52295874..52296025 -
Dt_chr1chromosomeDt_chr1:50883838..50883995 +
Dt_chr1chromosomeDt_chr1:33743704..33743856 -
D07chromosomeD07:17017845..17018002 -
A07chromosomeA07:21067795..21067947 -
Ghir_D07chromosomeGhir_D07:17417471..17417628 -
Ghir_A07chromosomeGhir_A07:22337651..22337803 -
D07chromosomeD07:16698677..16698834 -
A07chromosomeA07:21358895..21359047 -
D07chromosomeD07:17388671..17388828 -
A07chromosomeA07:22385825..22385977 -
D07chromosomeD07:16941385..16941542 -
A07chromosomeA07:22125031..22125183 -
scaffold20462supercontigscaffold20462:325787..325953 +
scaffold10932supercontigscaffold10932:65919..66394 +
scaffold10685supercontigscaffold10685:4933..5082 +
Gbar_D07chromosomeGbar_D07:17358201..17358367 -
Gbar_A07chromosomeGbar_A07:21922136..21922285 -
D07chromosomeD07:16971056..16971222 -
A07chromosomeA07:21942970..21943119 -
CM017629.1chromosomeCM017629.1:17352593..17352747 -
CM017616.1chromosomeCM017616.1:21862067..21862216 -
CM017655.1chromosomeCM017655.1:17595614..17595771 -
CM017642.1chromosomeCM017642.1:21982534..21982683 -
CM017707.1chromosomeCM017707.1:17283853..17284007 -
CM017694.1chromosomeCM017694.1:22275440..22275589 -
D07chromosomeD07:17598257..17598414 -
A07chromosomeA07:22558857..22559009 -
Chr07chromosomeChr07:22895350..22895499 -
Chr07chromosomeChr07:23508070..23508223 -
Chr07chromosomeChr07:36905445..36905602 +
B_07chromosomeB_07:22185752..22185900 -
Chr01chromosomeChr01:17091680..17091840 -
Chr_01chromosomeChr_01:13520582..13520739 -
Chr01chromosomeChr01:16949080..16949243 -
Chr01_3203614chromosomeChr01_3203614:2229..2377 -
Chr01chromosomeChr01:10867702..10867847 -
Chr01chromosomeChr01:13297789..13297937 -
Chr01chromosomeNAU2432:1..547 .
Chr01:16508344..16508890 -
Chr1chromosomeNAU2432:1..547 .
Chr1:20423351..20423897 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT051953.1DT051953.1Gossypium hirsutumsequence_feature


Image
File NameLegend
46_FISH_GEN-178-1117_fig3.jpgTwo BAC translocations involving two chromosome pairs of At2 and A3 and At4 and A5 between G. arboreum and A-subgenome of G. hirsutum. [Image from Wang et al., 2008, GEN-178-1117]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch07_At.07N/A47.31NAU2432View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch16_Dt.07N/A70.62NAU2432View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch07_At.07N/A55.84NAU2432View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch16_Dt.07N/A28.93NAU2432View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch07_At.07N/A29.95NAU2432View
6AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A72NAU2432View
7AD-genome wide Reference Map (2009)AD_ch07_At.07N/A181NAU2432View
8H16 x T586, F2sel (2009)AD_ch16_Dt.07N/A41.2NAU2432View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch16_Dt.07N/A82.6NAU2432View
10LMY22 x LY343, RIL (2016)chr.16N/A89NAU2432View
11LMY22 x LY343, RIL (2020)D07N/A138.61NAU2432View
12TM-1 x Hai-7124, BC1 (2007)AD_ch07_At.07N/A24.1NAU2432-460View
13TM-1 x Hai-7124, BC1 (2008)AD_ch07_At.07N/A95.46NAU2432-460View
14TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A32.4NAU2432-460View
15TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A71.5NAU2432-170View
16TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A70.53NAU2432-170View
17H16 x T586, F2 (2009)AD_ch16_Dt.07N/A71.3NAU2432-170View
18TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A60.5NAU2432-170View
19TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A39.9NAU2432-320View
Sequence
>NAU2432 ID=NAU2432; Name=NAU2432; organism=Gossypium hirsutum; type=genetic_marker; length=158bp
AACTACAAAAGGATGAACATGGTTATGATTTTATTCCATGGAAAAGAGAA
GAAGAAGAAGAAGAAGAAGACAAGGTTGAAAATAAAACATTAAAACAAGC
AAAAGCTCAAAAACCTAACACTGGAAAACAAGAAGCTTCCTAGCCTGCAA
TAACCCTA