NAU2424, NAU2424 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2424
Genbank IDDT051802
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT051802.1
Source TypeEST
Repeat MotifAAT(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2424_F: CACTTCTTTGCAGACACCAG
Primer 2NAU2424_R: GTCATGGACTTCAAGGGACT
Product Length225
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT051802
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:56784617..56784842 -
A12chromosomeA12:95761661..95761889 -
CM018226.1chromosomeCM018226.1:53400280..53400505 -
CM018213.1chromosomeCM018213.1:92634515..92634743 -
D5_12chromosomeD5_12:6332415..6332639 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:7106964..7107192 +
D10_12chromosomeD10_12:48447869..48448094 -
CM016625.1chromosomeCM016625.1:9107371..9107600 +
Dt_chr8chromosomeDt_chr8:49927799..49928027 +
Dt_chr8chromosomeDt_chr8:48558328..48558553 -
D12chromosomeD12:53289953..53290178 -
A12chromosomeA12:81192597..81192825 -
Ghir_D12chromosomeGhir_D12:55710313..55710538 -
Ghir_A12chromosomeGhir_A12:100400208..100400436 -
D12chromosomeD12:55027980..55028205 -
A12chromosomeA12:100720910..100721138 -
D12chromosomeD12:55800611..55800836 -
A12chromosomeA12:98552400..98552628 -
D12chromosomeD12:53980805..53981030 -
A12chromosomeA12:95473118..95473346 -
scaffold3048supercontigscaffold3048:620272..620500 +
scaffold1955supercontigscaffold1955:165831..166493 +
Gbar_D12chromosomeGbar_D12:52410670..52410895 -
Gbar_A12chromosomeGbar_A12:95378181..95378409 -
D12chromosomeD12:54203247..54203472 -
A12chromosomeA12:94618483..94618711 -
CM017634.1chromosomeCM017634.1:54099985..54100210 -
CM017621.1chromosomeCM017621.1:95771788..95772016 -
CM017660.1chromosomeCM017660.1:56960600..56960825 -
CM017647.1chromosomeCM017647.1:99425109..99425337 -
CM017712.1chromosomeCM017712.1:54720273..54720498 -
CM017699.1chromosomeCM017699.1:94967988..94968216 -
D12chromosomeD12:56165635..56165860 -
A12chromosomeA12:102080128..102080356 -
Chr12chromosomeChr12:103174477..103174705 -
Chr12chromosomeChr12:110165484..110165712 -
Chr12chromosomeChr12:51445603..51445828 -
B_12chromosomeB_12:81458326..81458554 -
Chr08chromosomeChr08:51729597..51729822 -
chr08chromosomechr08:39966331..39966555 -
Chr_08chromosomeChr_08:38090873..38091098 -
Chr08chromosomeChr08:53346212..53346437 -
Chr08chromosomeChr08:36834868..36835093 -
Chr08chromosomeChr08:28951667..28951892 -
Chr08chromosomeChr08:35473449..35473674 -
E12chromosomeE12:106714053..106714281 -
Chr12chromosomeChr12:163778133..163778362 -
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT051802.1DT051802.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch12_At.12N/A45.2NAU2424View
20-153 x sGK9708, RIL (2017)AD_ch26_Dt.12N/A44.03NAU2424View
Sequence
>NAU2424 ID=NAU2424; Name=NAU2424; organism=Gossypium hirsutum; type=genetic_marker; length=225bp
CACTTCTTTGCAGACACCAGATTTAGCATGCTGGAACTTCAACATAATTT
CTAATAAGAATGCCTTCAAACTGATAGAACCATATGTACTTAATCTAAAT
AATAATAATTACAGGAAAGGAAAGAACTCATCATCAATGCCTACTAGTAA
CTGGTGGTAAGTTATGAGATTGGACAAATTGGTTAAGATTCTTTCTAAGC
ATTTTAGTCCCTTGAAGTCCATGAC