NAU2317, NAU2317 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2317
Genbank IDDT049609
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT049609.1
Source TypeEST
Repeat MotifAT(7)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2317_F: GACTCCAGCCTTCACACAT
Primer 2NAU2317_R: TGGAAGAGTATAACGGCAGA
Product Length181
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT049609
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:128908887..128909067 -
Chr10chromosomeChr10:614081..614263 +
Chr10chromosomeChr10:602006..602186 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT049609.1DT049609.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x Hai-7124, BC1 (2008)AD_ch10_At.10N/A2.55NAU2317-220View
2TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A123.3NAU2317-220View
3Yumian-1 x T586, RIL (2006)AD_ch10_At.10N/A0NAU2317View
4DH962 x Jinmian-6, F2 (2009)AD_ch10_At.10N/A0NAU2317View
5DH962 x Jinmian-6, F2 (2009)AD_ch10_At.10N/A0NAU2317View
6Yumian-1 x T586, RIL (2015)AD_ch10_At.10N/A0NAU2317View
7Prema x 86-1, RIL (2015)AD_ch10_At.10N/A0NAU2317View
8Yumian-1 x 7235, RIL (2015)AD_ch10_At.10N/A20.4NAU2317View
9DH962 X Ji Mian 5, F2 (2015)AD_ch10_At.10N/A38.61NAU2317View
10DH962 x Ji Mian 5, RIL (2015)AD_ch10_At.10N/A39.9NAU2317View
11CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch10_At.10N/A165.7NAU2317View
12CCRI-35 x Yumian-1, RIL (2017)AD_ch10_At.10N/A0NAU2317View
13Yumian-1 x T586, RIL (2009)AD_ch10_At.10N/A0NAU2317/280y(C10)View
Sequence
>NAU2317 ID=NAU2317; Name=NAU2317; organism=Gossypium hirsutum; type=genetic_marker; length=181bp
GACTCCAGCCTTCACACATGGGCAAGGGAGGTCACCCCTCATATATATAT
ATATGTGTGTGTAGAACCAAACAATACAACATATAGTTTTAGATATTAAG
TCTACAAATAAACAAAGATTAGATAGAAGTAATGAGGTGATATACCTAAA
AAAGCTTTTATTCTGCCGTTATACTCTTCCA