NAU2300, NAU2300 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2300
Genbank IDDT049190
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT049190.1
Source TypeEST
Repeat MotifACAAC(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2300_F: TCATGTCATGGGAAACAGAG
Primer 2NAU2300_R: GCTGTCGAAGTGAAGGAAGT
Product Length238
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT049190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM017622.1chromosomeCM017622.1:103901869..103902099 -
CM017648.1chromosomeCM017648.1:108843447..108843678 -
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT049190.1DT049190.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch13_At.13N/A55nau2300View
2H18 x TM-1, F2 (2005)AD_ch13_At.13N/A144.5nau2300View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A56.5nau2300View
4TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A39.47NAU2300-500View
5TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A39.1NAU2300-500View
6TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A97.8NAU2300-500View
Sequence
>NAU2300 ID=NAU2300; Name=NAU2300; organism=Gossypium hirsutum; type=genetic_marker; length=238bp
TCATGTCATGGGAAACAGAGCATTTTTTTTTCACTTACAAAGGCATTTGG
TTGCACTACCATTCCAGTTGATTGAAGCAACAACACAACACAACACAACA
CATTTCTCGGAAACTATGTAGTACCATAAAATAAAATCACTTTTTTCTAT
TGATTGCTAATAATGATATTCTAGTACATTAAGGCTTTCTTCTGTTGGGA
ATTGAAAAAGGACTCTAGACTTCCTTCACTTCGACAGC