NAU2286, NAU2286 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2286
Genbank IDDT048876
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT048876.1
Source TypeEST
Repeat MotifTC(12)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2286_F: ATTATGGGATCCACCAACAC
Primer 2NAU2286_R: TAGTGGTCTTTGCACCAGAA
Product Length188
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT048876
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A12chromosomeA12:98864079..98864255 +
D12chromosomeD12:59711076..59711262 -
CM018226.1chromosomeCM018226.1:55978442..55978626 -
CM018213.1chromosomeCM018213.1:95592544..95592720 -
D5_12chromosomeD5_12:3725052..3725228 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:4025039..4025215 +
CM016625.1chromosomeCM016625.1:5011809..5011999 +
Dt_chr8chromosomeDt_chr8:53033492..53033678 +
At_chr12chromosomeAt_chr12:50945533..50945709 +
scaffold44370supercontigscaffold44370:716..892 +
scaffold3404_A12supercontigscaffold3404_A12:191274..191450 +
scaffold4588_D12supercontigscaffold4588_D12:12330..12516 -
Ghir_D12chromosomeGhir_D12:58596058..58596244 -
Ghir_A12chromosomeGhir_A12:103398110..103398286 -
D12chromosomeD12:57833710..57834009 -
A12chromosomeA12:103561296..103561472 -
D12chromosomeD12:58672697..58672883 -
A12chromosomeA12:101555309..101555485 -
A12chromosomeA12:98471653..98471829 -
scaffold7904supercontigscaffold7904:70936..71112 +
scaffold10938supercontigscaffold10938:174670..174854 -
Gbar_D12chromosomeGbar_D12:55062275..55062459 -
Gbar_A12chromosomeGbar_A12:98107134..98107310 -
D12chromosomeD12:56901779..56901963 -
A12chromosomeA12:97661776..97661952 -
CM017634.1chromosomeCM017634.1:56782168..56782352 -
CM017621.1chromosomeCM017621.1:98796226..98796402 -
CM017660.1chromosomeCM017660.1:59722682..59722868 -
CM017647.1chromosomeCM017647.1:102570886..102571062 -
CM017712.1chromosomeCM017712.1:57383305..57383489 -
CM017699.1chromosomeCM017699.1:98018131..98018307 -
D12chromosomeD12:59077969..59078155 -
A12chromosomeA12:105117332..105117508 -
Chr12chromosomeChr12:106153895..106154071 -
Chr12chromosomeChr12:113225922..113226098 -
B_12chromosomeB_12:86950016..86950192 +
Chr08chromosomeChr08:54423799..54423981 -
chr08chromosomechr08:42210324..42210500 -
Chr_08chromosomeChr_08:40148175..40148475 -
Chr08chromosomeChr08:37571824..37572006 -
E12chromosomeE12:109735348..109735540 -
Chr12chromosomeChr12:168720892..168721082 -
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT048876.1DT048876.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A182nau2286View
2Yumian-1 x 7235, RIL (2015)AD_ch26_Dt.12N/A53.6nau2286View
3TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A112.4NAU2286-160View
4TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A113.26NAU2286-160View
5H16 x T586, F2 (2009)AD_ch16_Dt.07N/A113.3NAU2286-160View
6TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A22.3NAU2286-160View
Sequence
>NAU2286 ID=NAU2286; Name=NAU2286; organism=Gossypium hirsutum; type=genetic_marker; length=188bp
ATTATGGGATCCACCAACACCCTACCAAAATTTCAAGGGGGGAGGTCTCT
CTCTCTCTCTCTCTCTCTCACGGCATATCAAAGTAGGCTGTATACTCTAG
GTTTCAAACAATTATTTCATGGTAAGGGTTTCAAGATTTTATTACCAAAA
GCTAACTGCATGGGGGTGTTCTGGTGCAAAGACCACTA